Variant report

Variant	rs826811
Chromosome Location	chr7:147075316-147075317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10242076	0.89[JPT][hapmap]
rs10251234	0.81[CHB][hapmap]
rs10260316	0.81[CHB][hapmap]
rs10270551	0.85[MEX][hapmap]
rs10281236	0.89[JPT][hapmap]
rs10282026	0.81[CHB][hapmap]
rs10282126	0.81[CHB][hapmap]
rs10500175	1.00[YRI][hapmap]
rs10952682	0.84[MEX][hapmap]
rs10952683	0.81[CHB][hapmap]
rs10952684	0.81[CHB][hapmap]
rs10952685	0.85[MEX][hapmap]
rs11972784	0.92[MEX][hapmap]
rs12540164	0.81[CHB][hapmap]
rs12703912	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12703913	0.85[MEX][hapmap]
rs12703914	0.81[CHB][hapmap]
rs13234094	1.00[YRI][hapmap]
rs1358540	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1406285	1.00[YRI][hapmap]
rs1468370	1.00[YRI][hapmap]
rs1479846	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1525220	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1528515	0.81[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1528522	1.00[YRI][hapmap]
rs1528527	0.81[CHB][hapmap]
rs1528528	0.81[CHB][hapmap]
rs2021880	0.81[CHB][hapmap]
rs2178212	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2222598	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs2373133	0.85[MEX][hapmap]
rs2373138	0.81[CHB][hapmap]
rs2373139	0.81[CHB][hapmap]
rs2620484	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2620485	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2888503	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs2888504	0.81[CHB][hapmap]
rs3915305	0.85[MEX][hapmap];1.00[YRI][hapmap]
rs4259337	0.81[CHB][hapmap]
rs4725723	0.80[CHB][hapmap]
rs4725726	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs4725731	0.85[MEX][hapmap]
rs4725732	1.00[YRI][hapmap]
rs4725735	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs4725737	1.00[YRI][hapmap]
rs4726860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4726861	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs4726864	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs4726870	0.85[MEX][hapmap]
rs4726872	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs6464803	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6464804	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6464805	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs6464809	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs6464810	0.85[MEX][hapmap]
rs6464811	0.81[CHB][hapmap]
rs6464813	0.81[CHB][hapmap]
rs6944237	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6947428	0.85[MEX][hapmap];1.00[YRI][hapmap]
rs6972045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs700294	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs700295	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs700304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs700305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs700309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap]
rs7781124	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7782093	0.81[CHB][hapmap]
rs7783425	0.85[MEX][hapmap]
rs7783548	0.85[MEX][hapmap];1.00[YRI][hapmap]
rs7789396	0.85[MEX][hapmap]
rs7794824	0.81[CHB][hapmap]
rs7796036	0.81[CHB][hapmap]
rs7805836	0.81[CHB][hapmap]
rs7807007	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs826643	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826644	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs826791	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs826794	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs826795	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs826796	0.94[CEU][hapmap];0.93[JPT][hapmap]
rs826798	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs826799	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs826801	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs826809	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs826810	0.89[JPT][hapmap]
rs826815	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs826816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs826819	0.89[ASN][1000 genomes]
rs826820	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs826821	0.84[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs826822	0.89[JPT][hapmap]
rs826824	0.89[JPT][hapmap]
rs826825	0.84[JPT][hapmap]
rs826827	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs826828	0.90[ASN][1000 genomes]
rs826829	0.84[JPT][hapmap]
rs826831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs861160	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs917125	0.81[CHB][hapmap]
rs917126	0.81[CHB][hapmap]
rs9640243	0.81[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv970432	chr7:147075290-147080148	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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