Variant report

Variant	rs826821
Chromosome Location	chr7:147053862-147053863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10281236	0.83[JPT][hapmap]
rs10500179	0.85[YRI][hapmap]
rs1358540	0.88[JPT][hapmap]
rs1479846	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs1525220	0.85[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1528515	0.87[JPT][hapmap]
rs17497557	0.80[YRI][hapmap]
rs2178212	0.88[JPT][hapmap]
rs2620484	0.88[JPT][hapmap]
rs2620485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4726860	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs4726861	0.83[CHD][hapmap];0.88[JPT][hapmap]
rs6464803	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs6464804	0.88[JPT][hapmap]
rs6464805	0.83[JPT][hapmap]
rs6944237	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs6972045	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs700294	0.81[CHB][hapmap];0.93[JPT][hapmap]
rs700295	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs700303	0.84[JPT][hapmap]
rs700304	0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs700305	0.84[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs700309	0.84[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs7781124	0.94[JPT][hapmap]
rs7798078	0.85[YRI][hapmap]
rs7807007	0.88[JPT][hapmap]
rs826643	0.87[JPT][hapmap]
rs826644	0.85[JPT][hapmap]
rs826654	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs826794	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs826795	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs826796	0.93[JPT][hapmap]
rs826798	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs826799	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs826801	0.83[ASN][1000 genomes]
rs826808	0.83[GIH][hapmap];0.83[JPT][hapmap]
rs826809	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap]
rs826810	0.83[JPT][hapmap]
rs826811	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs826815	0.83[JPT][hapmap]
rs826816	0.84[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs826819	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826820	0.85[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs826822	0.83[JPT][hapmap]
rs826824	0.83[JPT][hapmap]
rs826825	0.85[CHD][hapmap];0.89[JPT][hapmap]
rs826827	0.93[JPT][hapmap]
rs826828	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs826829	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs826831	0.84[CHB][hapmap];0.94[JPT][hapmap]
rs861160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
7	nsv526693	chr7:147011388-147054250	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs826821	KCNH2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147052200-147055800	Weak transcription	Brain Hippocampus Middle	brain

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