Variant report

Variant	rs826825
Chromosome Location	chr7:147058386-147058387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10242076	0.81[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs10281236	0.94[JPT][hapmap]
rs12703912	0.88[JPT][hapmap]
rs1351312	0.81[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs1479846	0.84[JPT][hapmap]
rs1525220	0.84[JPT][hapmap]
rs2022226	0.87[CHD][hapmap]
rs2620485	0.89[JPT][hapmap]
rs4726860	0.82[JPT][hapmap]
rs6464805	0.83[JPT][hapmap]
rs6944237	0.85[JPT][hapmap]
rs6972045	0.82[JPT][hapmap]
rs700294	0.81[JPT][hapmap]
rs700303	1.00[CEU][hapmap];0.90[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap]
rs700304	0.83[JPT][hapmap]
rs700305	0.84[JPT][hapmap]
rs700309	0.84[JPT][hapmap]
rs7781124	0.82[JPT][hapmap]
rs826654	0.84[JPT][hapmap]
rs826794	0.84[JPT][hapmap]
rs826795	0.84[JPT][hapmap]
rs826796	0.80[JPT][hapmap]
rs826798	0.84[JPT][hapmap]
rs826799	0.84[JPT][hapmap]
rs826808	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs826809	0.84[JPT][hapmap]
rs826810	0.85[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap]
rs826811	0.84[JPT][hapmap]
rs826815	0.83[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs826816	0.83[JPT][hapmap]
rs826819	0.80[ASN][1000 genomes]
rs826820	0.84[JPT][hapmap]
rs826821	0.85[CHD][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs826822	0.81[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs826824	0.82[CHB][hapmap];0.85[CHD][hapmap];0.94[JPT][hapmap]
rs826827	0.86[JPT][hapmap]
rs826828	0.81[ASN][1000 genomes]
rs826829	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs826831	0.84[JPT][hapmap]
rs861160	0.94[JPT][hapmap]
rs9640243	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1033398	chr7:146989035-147101573	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
5	nsv465192	chr7:147001077-147086045	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a
6	nsv608943	chr7:147001077-147086045	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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