Variant report

Variant	rs2022226
Chromosome Location	chr7:147157421-147157422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10242076	0.84[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap]
rs10281236	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs12703912	0.92[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap]
rs1351312	0.81[CHB][hapmap];0.92[CHD][hapmap]
rs6464805	0.80[JPT][hapmap]
rs700303	0.82[ASW][hapmap];0.87[CHD][hapmap];0.85[LWK][hapmap]
rs826810	0.85[CHB][hapmap];0.97[CHD][hapmap];0.80[JPT][hapmap]
rs826815	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs826822	0.87[CEU][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.80[JPT][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs826824	0.87[CEU][hapmap];0.87[CHD][hapmap];0.80[JPT][hapmap];0.82[TSI][hapmap]
rs826825	0.87[CHD][hapmap]
rs9640243	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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