Variant report

Variant	rs10242076
Chromosome Location	chr7:147155515-147155516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10281236	0.87[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap]
rs12703912	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1351312	0.90[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1358540	0.89[JPT][hapmap]
rs1479846	0.84[JPT][hapmap]
rs1525220	0.84[JPT][hapmap]
rs1528515	0.88[JPT][hapmap]
rs2022226	0.84[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap]
rs2178212	0.89[JPT][hapmap]
rs2620460	0.81[JPT][hapmap]
rs2620484	0.89[JPT][hapmap]
rs4726860	0.94[JPT][hapmap]
rs4726861	0.89[JPT][hapmap]
rs6464803	0.89[JPT][hapmap]
rs6464804	0.89[JPT][hapmap]
rs6464805	0.94[JPT][hapmap]
rs6944237	0.85[JPT][hapmap]
rs6972045	0.94[JPT][hapmap]
rs700294	0.81[JPT][hapmap]
rs700303	0.85[CHB][hapmap];0.84[CHD][hapmap];0.84[JPT][hapmap]
rs700304	0.83[JPT][hapmap]
rs700305	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs700309	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs7781124	0.88[JPT][hapmap]
rs7807007	0.89[JPT][hapmap]
rs826643	0.88[JPT][hapmap]
rs826644	0.86[JPT][hapmap]
rs826654	0.84[JPT][hapmap]
rs826794	0.84[JPT][hapmap]
rs826795	0.84[JPT][hapmap]
rs826798	0.84[JPT][hapmap]
rs826799	0.84[JPT][hapmap]
rs826808	0.83[JPT][hapmap]
rs826810	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap]
rs826811	0.89[JPT][hapmap]
rs826815	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs826816	0.83[JPT][hapmap]
rs826820	0.84[JPT][hapmap]
rs826822	0.87[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs826824	0.87[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap]
rs826825	0.81[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs826827	0.86[JPT][hapmap]
rs826829	0.81[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap]
rs826831	0.84[JPT][hapmap]
rs861160	0.81[JPT][hapmap]
rs9640243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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