Variant report

Variant	rs11972784
Chromosome Location	chr7:147151582-147151583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1018993	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1018994	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1018996	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10251234	0.94[CEU][hapmap]
rs10260316	0.94[CEU][hapmap]
rs10260458	0.94[CEU][hapmap]
rs10270551	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs10276608	0.94[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10282026	0.94[CEU][hapmap]
rs10282126	0.94[CEU][hapmap]
rs10952681	0.94[CEU][hapmap]
rs10952682	1.00[ASW][hapmap];0.94[CEU][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs10952683	0.94[CEU][hapmap]
rs10952684	0.94[CEU][hapmap]
rs10952685	1.00[ASW][hapmap];0.94[CEU][hapmap];0.96[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs12540164	0.94[CEU][hapmap]
rs12703913	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs12703914	0.94[CEU][hapmap]
rs1358540	0.94[CEU][hapmap];0.89[YRI][hapmap]
rs1406284	0.84[CEU][hapmap];0.81[GIH][hapmap];0.84[EUR][1000 genomes]
rs1406285	0.89[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes]
rs1468370	0.89[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs1528515	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1528522	0.89[CEU][hapmap];0.80[CHB][hapmap];0.82[EUR][1000 genomes]
rs1528527	0.94[CEU][hapmap]
rs1528528	0.94[CEU][hapmap]
rs1528531	0.94[CEU][hapmap]
rs2021879	0.93[CEU][hapmap]
rs2021880	0.94[CEU][hapmap]
rs2022225	0.94[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap]
rs2178212	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2373132	0.94[CEU][hapmap]
rs2373133	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs2373138	0.94[CEU][hapmap]
rs2373139	0.94[CEU][hapmap]
rs2620484	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2888503	0.94[CEU][hapmap]
rs2888504	0.94[CEU][hapmap]
rs3915305	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs4259337	0.94[CEU][hapmap]
rs4725723	0.94[CEU][hapmap]
rs4725725	0.89[CEU][hapmap]
rs4725726	0.94[CEU][hapmap]
rs4725731	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs4725732	0.94[CEU][hapmap]
rs4725735	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs4725737	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4726860	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs4726861	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap]
rs4726864	0.94[CEU][hapmap]
rs4726870	1.00[ASW][hapmap];0.89[CEU][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap]
rs4726871	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4726872	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs4726874	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6464803	1.00[CEU][hapmap]
rs6464804	1.00[CEU][hapmap]
rs6464805	0.84[CEU][hapmap]
rs6464809	0.94[CEU][hapmap]
rs6464810	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs6464811	0.94[CEU][hapmap]
rs6464812	0.94[CEU][hapmap]
rs6464813	0.94[CEU][hapmap]
rs6944237	0.94[CEU][hapmap];0.85[YRI][hapmap]
rs6947428	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs6972045	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs700304	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs700305	0.93[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs700309	0.90[GIH][hapmap];1.00[MEX][hapmap];0.80[TSI][hapmap]
rs7781124	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs7782093	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7783425	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs7783548	0.94[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs7789396	0.89[CEU][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];0.86[TSI][hapmap]
rs7794824	0.94[CEU][hapmap]
rs7796036	0.94[CEU][hapmap]
rs7805836	0.94[CEU][hapmap]
rs7807007	1.00[CEU][hapmap]
rs7810880	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs826643	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs826644	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs826811	0.92[MEX][hapmap]
rs826816	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs917125	0.94[CEU][hapmap]
rs917126	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11972784	CUL1	cis	cerebellum	SCAN
rs11972784	FAM115A	cis	parietal	SCAN
rs11972784	GIMAP1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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