Variant report

Variant	rs833012
Chromosome Location	chr7:136852941-136852942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10808290	0.80[EUR][1000 genomes]
rs12539315	0.94[ASN][1000 genomes]
rs13244755	0.91[ASN][1000 genomes]
rs1364719	0.80[EUR][1000 genomes]
rs1425075	0.81[EUR][1000 genomes]
rs1425076	0.81[EUR][1000 genomes]
rs1425079	0.80[EUR][1000 genomes]
rs1477525	0.80[EUR][1000 genomes]
rs1593297	0.81[EUR][1000 genomes]
rs1593299	0.81[EUR][1000 genomes]
rs1593301	0.81[EUR][1000 genomes]
rs1647750	0.82[EUR][1000 genomes]
rs1647751	0.81[EUR][1000 genomes]
rs1725014	0.82[EUR][1000 genomes]
rs1725036	0.81[EUR][1000 genomes]
rs1981914	0.80[EUR][1000 genomes]
rs2113888	0.80[EUR][1000 genomes]
rs4090714	0.80[EUR][1000 genomes]
rs55707128	0.80[EUR][1000 genomes]
rs62487092	0.85[ASN][1000 genomes]
rs6955370	0.80[EUR][1000 genomes]
rs6965672	0.80[EUR][1000 genomes]
rs706552	0.81[EUR][1000 genomes]
rs7781663	0.80[EUR][1000 genomes]
rs7787277	0.94[ASN][1000 genomes]
rs7794481	0.82[EUR][1000 genomes]
rs832949	0.81[EUR][1000 genomes]
rs832950	0.81[EUR][1000 genomes]
rs832954	0.81[EUR][1000 genomes]
rs832958	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs832959	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs832960	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs832965	0.81[EUR][1000 genomes]
rs832966	0.81[EUR][1000 genomes]
rs832972	0.81[EUR][1000 genomes]
rs832995	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs832997	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs832999	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs833011	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv464730	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608463	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1034546	chr7:136832263-136858804	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136850400-136854000	Weak transcription	Fetal Kidney	kidney
2	chr7:136851200-136853800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:136851200-136853800	Weak transcription	Fetal Stomach	stomach

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