Variant report

Variant	rs832958
Chromosome Location	chr7:136851486-136851487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10256915	0.90[JPT][hapmap]
rs10264746	0.80[ASN][1000 genomes]
rs10808290	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12539315	0.94[ASN][1000 genomes]
rs13244755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1364719	0.80[EUR][1000 genomes]
rs1425075	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1425076	0.81[EUR][1000 genomes]
rs1425079	0.80[EUR][1000 genomes]
rs1451528	0.90[JPT][hapmap]
rs1477525	0.80[EUR][1000 genomes]
rs1593297	0.81[EUR][1000 genomes]
rs1593299	0.81[EUR][1000 genomes]
rs1593301	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1593302	0.80[AFR][1000 genomes]
rs1647750	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1647751	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1725014	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1725036	0.81[EUR][1000 genomes]
rs1981914	0.80[EUR][1000 genomes]
rs2113888	0.80[EUR][1000 genomes]
rs4090714	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs55707128	0.80[EUR][1000 genomes]
rs62487092	0.86[ASN][1000 genomes]
rs6955370	0.80[EUR][1000 genomes]
rs6965672	0.80[EUR][1000 genomes]
rs6975947	0.95[JPT][hapmap]
rs706552	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs706556	0.80[ASN][1000 genomes]
rs7781663	0.80[EUR][1000 genomes]
rs7787277	0.99[ASN][1000 genomes]
rs7794481	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs832949	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs832950	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs832954	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs832959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832965	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs832966	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs832972	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs832993	0.82[ASN][1000 genomes]
rs832995	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832998	0.82[ASN][1000 genomes]
rs832999	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs833007	0.80[ASN][1000 genomes]
rs833008	0.80[ASN][1000 genomes]
rs833011	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs833012	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv464730	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608463	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1034546	chr7:136832263-136858804	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2563049	chr7:136850762-136852698	Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	esv9074	chr7:136851355-136852174	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv3388206	chr7:136851412-136852460	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv2126350	chr7:136851426-136852127	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136850400-136854000	Weak transcription	Fetal Kidney	kidney
2	chr7:136850600-136851600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:136850800-136851600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:136851200-136853800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:136851200-136853800	Weak transcription	Fetal Stomach	stomach

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