Variant report

Variant	rs6975947
Chromosome Location	chr7:136905724-136905725
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10256915	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10954575	0.87[ASN][1000 genomes]
rs12538395	0.91[ASN][1000 genomes]
rs13243562	0.91[ASN][1000 genomes]
rs13244755	0.95[JPT][hapmap]
rs1451528	0.80[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.90[ASN][1000 genomes]
rs1725021	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4732247	0.91[ASN][1000 genomes]
rs721239	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs832958	0.95[JPT][hapmap]
rs832960	0.95[JPT][hapmap];0.93[TSI][hapmap]
rs832973	0.95[ASN][1000 genomes]
rs832974	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs832984	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs832997	0.95[JPT][hapmap];0.93[TSI][hapmap]
rs844275	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv608464	chr7:136882925-136935459	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv608465	chr7:136888610-136935459	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136900600-136913400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:136901600-136922800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:136902000-136933800	Weak transcription	Fetal Brain Female	brain
4	chr7:136902200-136915800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:136903400-136908200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:136903400-136910400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:136904000-136909400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:136904800-136909400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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