Variant report

Variant	rs10256915
Chromosome Location	chr7:136913223-136913224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10954575	0.82[ASN][1000 genomes]
rs12538395	0.84[ASN][1000 genomes]
rs13243562	0.84[ASN][1000 genomes]
rs13244755	0.90[JPT][hapmap]
rs1451528	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1725021	0.84[ASN][1000 genomes]
rs4732247	0.84[ASN][1000 genomes]
rs6975947	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs721239	0.92[CEU][hapmap];0.95[GIH][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs832958	0.90[JPT][hapmap]
rs832960	0.90[JPT][hapmap]
rs832973	0.88[ASN][1000 genomes]
rs832974	0.87[ASN][1000 genomes]
rs832984	0.85[ASN][1000 genomes]
rs832997	0.90[JPT][hapmap]
rs844275	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv608464	chr7:136882925-136935459	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv608465	chr7:136888610-136935459	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136900600-136913400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:136901600-136922800	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:136902000-136933800	Weak transcription	Fetal Brain Female	brain
4	chr7:136902200-136915800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:136906600-136925200	Weak transcription	Fetal Stomach	stomach
6	chr7:136909200-136922600	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:136909600-136935800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:136909800-136926200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr7:136909800-136943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:136910200-136913800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:136911000-136922400	Weak transcription	Brain Substantia Nigra	brain
12	chr7:136911000-136927000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:136911200-136925800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:136911600-136936400	Weak transcription	Fetal Heart	heart
15	chr7:136911800-136920800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:136912400-136922800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:136912800-136913400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:136912800-136913800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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