Variant report

Variant	rs832960
Chromosome Location	chr7:136849386-136849387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr7:136849181-136849399	K562	blood:	n/a	n/a
2	TCF7L2	chr7:136849070-136849456	Hela-S3	cervix:	n/a	n/a
3	GABPA	chr7:136849025-136849400	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:196521592..196522296-chr7:136849044..136849880,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000234352	TF binding region
ENSG00000196950	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10254754	0.81[EUR][1000 genomes]
rs10256915	0.90[JPT][hapmap]
rs10264746	0.80[ASN][1000 genomes]
rs10808290	0.81[EUR][1000 genomes]
rs12539315	0.94[ASN][1000 genomes]
rs13244755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1364719	0.81[EUR][1000 genomes]
rs1425075	0.82[EUR][1000 genomes]
rs1425076	0.82[EUR][1000 genomes]
rs1425079	0.81[EUR][1000 genomes]
rs1451528	0.82[GIH][hapmap];0.90[JPT][hapmap]
rs1477524	0.81[EUR][1000 genomes]
rs1477525	0.81[EUR][1000 genomes]
rs1593297	0.82[EUR][1000 genomes]
rs1593298	0.81[EUR][1000 genomes]
rs1593299	0.82[EUR][1000 genomes]
rs1593301	0.82[EUR][1000 genomes]
rs1647750	0.83[EUR][1000 genomes]
rs1647751	0.82[EUR][1000 genomes]
rs1725014	0.83[EUR][1000 genomes]
rs1725036	0.82[EUR][1000 genomes]
rs17417816	0.81[EUR][1000 genomes]
rs1981914	0.81[EUR][1000 genomes]
rs2113888	0.81[EUR][1000 genomes]
rs4090714	0.81[EUR][1000 genomes]
rs55707128	0.81[EUR][1000 genomes]
rs62487092	0.86[ASN][1000 genomes]
rs6467699	0.81[EUR][1000 genomes]
rs6955370	0.81[EUR][1000 genomes]
rs6965672	0.81[EUR][1000 genomes]
rs6975947	0.95[JPT][hapmap];0.93[TSI][hapmap]
rs706552	0.82[EUR][1000 genomes]
rs706556	0.80[ASN][1000 genomes]
rs721239	0.88[TSI][hapmap]
rs7781663	0.81[EUR][1000 genomes]
rs7787277	0.99[ASN][1000 genomes]
rs7794481	0.83[EUR][1000 genomes]
rs832949	0.82[EUR][1000 genomes]
rs832950	0.82[EUR][1000 genomes]
rs832954	0.82[EUR][1000 genomes]
rs832958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832959	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832965	0.82[EUR][1000 genomes]
rs832966	0.82[EUR][1000 genomes]
rs832972	0.82[EUR][1000 genomes]
rs832993	0.82[ASN][1000 genomes]
rs832995	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832997	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832998	0.82[ASN][1000 genomes]
rs832999	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs833007	0.80[ASN][1000 genomes]
rs833008	0.80[ASN][1000 genomes]
rs833011	0.88[EUR][1000 genomes]
rs833012	0.86[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv464730	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv608463	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1034546	chr7:136832263-136858804	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs832960	WDR91	cis	parietal	SCAN
rs832960	AKR1B1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136849000-136849400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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