Variant report

Variant	rs832998
Chromosome Location	chr7:136838599-136838600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10264746	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13244755	0.81[ASN][1000 genomes]
rs1425070	0.81[EUR][1000 genomes]
rs1425077	0.81[EUR][1000 genomes]
rs1425082	0.81[EUR][1000 genomes]
rs1425083	0.81[EUR][1000 genomes]
rs1647752	0.82[EUR][1000 genomes]
rs67499443	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6971259	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975389	0.81[EUR][1000 genomes]
rs706556	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72611531	0.81[EUR][1000 genomes]
rs7787277	0.81[ASN][1000 genomes]
rs832948	0.81[EUR][1000 genomes]
rs832951	0.80[EUR][1000 genomes]
rs832952	0.81[EUR][1000 genomes]
rs832953	0.81[EUR][1000 genomes]
rs832958	0.82[ASN][1000 genomes]
rs832959	0.82[ASN][1000 genomes]
rs832960	0.82[ASN][1000 genomes]
rs832967	0.81[EUR][1000 genomes]
rs832968	0.81[EUR][1000 genomes]
rs832969	0.81[EUR][1000 genomes]
rs832971	0.81[EUR][1000 genomes]
rs832993	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832997	0.82[ASN][1000 genomes]
rs833003	0.98[EUR][1000 genomes]
rs833004	0.98[EUR][1000 genomes]
rs833005	0.97[EUR][1000 genomes]
rs833007	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs833008	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs833009	0.98[EUR][1000 genomes]
rs833010	0.98[EUR][1000 genomes]
rs833013	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs833022	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv608462	chr7:136746607-136839390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv464730	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv608463	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1034546	chr7:136832263-136858804	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3349969	chr7:136836837-136839385	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3427542	chr7:136836837-136839385	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv3436126	chr7:136837262-136838760	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136833000-136838800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:136838400-136838800	Enhancers	Colon Smooth Muscle	Colon

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