Variant report

Variant	rs832967
Chromosome Location	chr7:136832667-136832668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10230065	0.83[ASN][1000 genomes]
rs10254754	0.82[ASN][1000 genomes]
rs10258872	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10262637	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10808290	0.82[ASN][1000 genomes]
rs10954577	0.88[CEU][hapmap]
rs13244755	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs1425070	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1425071	0.82[ASN][1000 genomes]
rs1425075	0.82[ASN][1000 genomes]
rs1425076	0.81[ASN][1000 genomes]
rs1425077	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1425079	0.82[ASN][1000 genomes]
rs1425082	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1425083	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1477524	0.82[ASN][1000 genomes]
rs1477525	0.82[ASN][1000 genomes]
rs1579354	0.88[CEU][hapmap]
rs1593297	0.82[ASN][1000 genomes]
rs1593298	0.81[ASN][1000 genomes]
rs1593299	0.82[ASN][1000 genomes]
rs1593301	0.82[ASN][1000 genomes]
rs1593302	0.82[ASN][1000 genomes]
rs1647750	0.81[ASN][1000 genomes]
rs1647751	0.81[ASN][1000 genomes]
rs1647752	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1725014	0.81[ASN][1000 genomes]
rs1725036	0.81[ASN][1000 genomes]
rs17417816	0.82[ASN][1000 genomes]
rs17430785	0.81[ASN][1000 genomes]
rs1880792	0.82[ASN][1000 genomes]
rs1981914	0.82[ASN][1000 genomes]
rs2113888	0.82[ASN][1000 genomes]
rs4090714	0.82[ASN][1000 genomes]
rs4732242	0.82[ASN][1000 genomes]
rs55707128	0.82[ASN][1000 genomes]
rs6467699	0.82[ASN][1000 genomes]
rs6965672	0.82[ASN][1000 genomes]
rs6971259	0.81[EUR][1000 genomes]
rs6975389	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975947	0.80[JPT][hapmap]
rs706552	0.82[ASN][1000 genomes]
rs72611531	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72611532	0.82[AMR][1000 genomes]
rs7781663	0.82[ASN][1000 genomes]
rs7794481	0.82[ASN][1000 genomes]
rs7802795	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7803048	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs832948	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs832949	0.82[ASN][1000 genomes]
rs832950	0.82[ASN][1000 genomes]
rs832951	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs832952	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs832953	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs832954	0.81[ASN][1000 genomes]
rs832958	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs832960	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs832965	0.82[ASN][1000 genomes]
rs832966	0.82[ASN][1000 genomes]
rs832968	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs832969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832971	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs832972	0.81[ASN][1000 genomes]
rs832993	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs832997	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs832998	0.81[EUR][1000 genomes]
rs9719053	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv608462	chr7:136746607-136839390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv464730	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv608463	chr7:136825522-136882925	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831149	chr7:136831665-137006468	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1034546	chr7:136832263-136858804	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136830200-136834000	Enhancers	Colon Smooth Muscle	Colon
2	chr7:136830200-136834400	Enhancers	Fetal Heart	heart
3	chr7:136830600-136833800	Enhancers	Fetal Stomach	stomach
4	chr7:136830800-136833000	Enhancers	HSMMtube	muscle
5	chr7:136830800-136834000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr7:136831000-136833000	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:136831400-136833200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:136831800-136833000	Enhancers	NH-A	brain
9	chr7:136832000-136832800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:136832000-136832800	Enhancers	NHDF-Ad	bronchial
11	chr7:136832000-136832800	Enhancers	Osteobl	bone
12	chr7:136832000-136833800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:136832200-136832800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:136832200-136833200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:136832200-136833200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:136832200-136835600	Weak transcription	Fetal Kidney	kidney
17	chr7:136832400-136835800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:136832600-136833000	Weak transcription	NHLF	lung

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