Variant report

Variant	rs17430785
Chromosome Location	chr7:136812636-136812637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10230065	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10254754	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10256915	0.90[JPT][hapmap]
rs10808290	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13244755	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1364719	0.82[AMR][1000 genomes]
rs1425071	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1425075	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1425076	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1425079	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1425080	0.83[ASN][1000 genomes]
rs1451528	0.90[JPT][hapmap]
rs1477524	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1477525	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1593297	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1593298	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1593299	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1593301	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1593302	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1647750	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1647751	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1725014	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1725036	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17417816	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1880792	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1981914	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2113888	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4090714	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4732242	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55707128	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6467699	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6955370	0.83[AMR][1000 genomes]
rs6965672	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6975947	0.95[JPT][hapmap]
rs706552	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7781663	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7794481	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs832949	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs832950	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs832954	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs832958	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs832960	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs832965	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs832966	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs832967	0.81[ASN][1000 genomes]
rs832969	0.81[ASN][1000 genomes]
rs832972	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs832997	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1028902	chr7:136727136-136858804	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv608462	chr7:136746607-136839390	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2754488	chr7:136798166-136817637	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136812200-136815600	Weak transcription	NHLF	lung
2	chr7:136812600-136815600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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