Variant report

Variant	rs839118
Chromosome Location	chr12:86559609-86559610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:86559122..86560912-chr12:86565276..86567562,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10745407	0.81[CEU][hapmap]
rs10858408	0.81[CEU][hapmap]
rs1493415	0.80[CEU][hapmap]
rs1586938	0.83[ASN][1000 genomes]
rs1628799	0.88[CHB][hapmap]
rs1698757	0.96[CEU][hapmap]
rs1698787	0.84[CHB][hapmap]
rs17013664	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs17013683	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs2131565	0.80[CEU][hapmap]
rs2405792	0.83[ASN][1000 genomes]
rs2406123	0.81[CEU][hapmap]
rs2406127	0.81[CEU][hapmap]
rs2471560	0.83[CHB][hapmap]
rs2897280	0.81[CEU][hapmap]
rs4265650	0.81[CEU][hapmap]
rs57328168	0.85[ASN][1000 genomes]
rs58054764	0.84[ASN][1000 genomes]
rs60587165	0.85[ASN][1000 genomes]
rs61571841	0.85[ASN][1000 genomes]
rs6538025	0.83[CHB][hapmap]
rs6538029	0.81[CEU][hapmap]
rs73379423	0.85[ASN][1000 genomes]
rs7957560	0.81[CEU][hapmap]
rs7964553	0.81[CEU][hapmap]
rs7972484	0.81[CEU][hapmap]
rs7973773	0.81[CEU][hapmap]
rs839104	0.83[CHB][hapmap]
rs839105	0.83[CHB][hapmap]
rs839113	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs839119	1.00[CEU][hapmap]
rs839120	1.00[CEU][hapmap]
rs839123	1.00[CEU][hapmap]
rs839124	1.00[CEU][hapmap]
rs839128	1.00[CEU][hapmap]
rs839137	0.89[CEU][hapmap];0.90[CHB][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs839148	0.83[CHB][hapmap]
rs839152	0.87[CHB][hapmap]
rs839157	0.83[CHB][hapmap]
rs839162	0.82[CHB][hapmap]
rs839165	0.83[CHB][hapmap]
rs839171	0.83[CHB][hapmap]
rs839182	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs839185	0.86[EUR][1000 genomes]
rs839188	0.86[EUR][1000 genomes]
rs839189	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs839191	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs844434	0.83[CHB][hapmap]
rs844435	0.83[CHB][hapmap]
rs863394	0.86[CHB][hapmap]
rs863395	0.83[CHB][hapmap]
rs865722	0.89[CEU][hapmap]
rs866893	0.96[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3442004	chr12:86514695-86599965	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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