Variant report

Variant	rs844894
Chromosome Location	chr20:23112188-23112189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23092796..23095143-chr20:23110138..23112682,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs699796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699797	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844891	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs844892	0.86[EUR][1000 genomes]
rs844895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844907	0.85[EUR][1000 genomes]
rs844908	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23085800-23114600	Enhancers	Placenta	Placenta
2	chr20:23102000-23114000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr20:23106600-23112600	Weak transcription	Fetal Intestine Large	intestine
4	chr20:23106800-23114400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr20:23106800-23116400	Weak transcription	Esophagus	oesophagus
6	chr20:23107600-23113200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr20:23109000-23120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:23110000-23112800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr20:23110200-23112200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr20:23110200-23112600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr20:23110400-23112400	Weak transcription	HUVEC	blood vessel
12	chr20:23110400-23112800	Weak transcription	Fetal Intestine Small	intestine
13	chr20:23110400-23113400	Weak transcription	Ovary	ovary
14	chr20:23110400-23113600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr20:23110400-23121600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr20:23110600-23113800	Weak transcription	Fetal Heart	heart
17	chr20:23110800-23112200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr20:23110800-23112600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr20:23111000-23112400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr20:23111000-23112400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr20:23111000-23112400	Weak transcription	Dnd41	blood
22	chr20:23111000-23112600	Weak transcription	Fetal Muscle Leg	muscle
23	chr20:23111000-23112600	Weak transcription	Spleen	Spleen
24	chr20:23111000-23120400	Weak transcription	Pancreas	Pancrea
25	chr20:23111200-23112400	Weak transcription	Right Atrium	heart
26	chr20:23111200-23112800	Weak transcription	Left Ventricle	heart
27	chr20:23111200-23112800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr20:23111200-23113000	Weak transcription	Psoas Muscle	Psoas
29	chr20:23111400-23112600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr20:23111400-23112800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr20:23111600-23112600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr20:23111600-23113000	Weak transcription	Fetal Stomach	stomach
33	chr20:23111600-23113200	Weak transcription	Fetal Lung	lung
34	chr20:23111800-23114000	Enhancers	Lung	lung
35	chr20:23111800-23114600	Flanking Active TSS	K562	blood
36	chr20:23112000-23112200	Enhancers	Right Ventricle	heart
37	chr20:23112000-23112400	Weak transcription	Adipose Nuclei	Adipose
38	chr20:23112000-23113200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr20:23112000-23114800	Enhancers	Fetal Muscle Trunk	muscle

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