Variant report

Variant	rs844900
Chromosome Location	chr20:23116665-23116666
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr20:23116357-23116693	HL-60	blood:	n/a	n/a
2	SPI1	chr20:23116290-23116807	HL-60	blood:	n/a	n/a
3	POLR2A	chr20:23116646-23118432	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:23115096..23116873-chr20:23336081..23338502,2	K562	blood:
2	chr20:23062655..23064534-chr20:23114013..23116942,2	K562	blood:
3	chr20:23071726..23074715-chr20:23114683..23116931,2	K562	blood:
4	chr20:23039939..23042121-chr20:23116423..23118513,2	K562	blood:
5	chr20:22392151..22394813-chr20:23116563..23119413,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-12	chr20:23116598-23118942	ucscGeneNc_uc002wsw_1

No data

Variant related genes	Relation type
LINC00656	TF binding region
ENSG00000232645	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs699796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699797	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844891	0.91[AMR][1000 genomes]
rs844892	0.82[EUR][1000 genomes]
rs844894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844897	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844907	0.85[EUR][1000 genomes]
rs844908	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23109000-23120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23110400-23121600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr20:23111000-23120400	Weak transcription	Pancreas	Pancrea
4	chr20:23112600-23120600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr20:23114200-23120200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:23114200-23121800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr20:23114400-23116800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr20:23114600-23116800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr20:23114600-23116800	Weak transcription	Placenta	Placenta
10	chr20:23114600-23116800	Weak transcription	Lung	lung
11	chr20:23114600-23116800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr20:23114600-23117000	Enhancers	K562	blood
13	chr20:23114600-23117600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr20:23114600-23117600	Weak transcription	Left Ventricle	heart
15	chr20:23114600-23119200	Weak transcription	Spleen	Spleen
16	chr20:23114600-23120400	Weak transcription	Fetal Lung	lung
17	chr20:23114600-23121800	Weak transcription	Right Ventricle	heart
18	chr20:23114600-23122800	Weak transcription	Right Atrium	heart
19	chr20:23115400-23117200	Weak transcription	A549	lung
20	chr20:23115800-23122600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr20:23116200-23117000	Enhancers	Adipose Nuclei	Adipose
22	chr20:23116200-23117200	Enhancers	HUVEC	blood vessel
23	chr20:23116200-23117800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr20:23116200-23118400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr20:23116200-23119600	Enhancers	Dnd41	blood
26	chr20:23116400-23116800	Weak transcription	Fetal Thymus	thymus
27	chr20:23116400-23116800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr20:23116400-23117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr20:23116400-23117000	Enhancers	NHDF-Ad	bronchial
30	chr20:23116400-23119600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr20:23116400-23120000	Enhancers	Esophagus	oesophagus
32	chr20:23116400-23120600	Enhancers	Psoas Muscle	Psoas
33	chr20:23116600-23118400	Enhancers	Fetal Muscle Trunk	muscle
34	chr20:23116600-23119200	Enhancers	Fetal Muscle Leg	muscle

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