Variant report

Variant	rs844895
Chromosome Location	chr20:23113092-23113093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23112532..23115241-chr20:23342774..23344532,2	K562	blood:

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs699796	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699797	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844820	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs844867	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs844885	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[LWK][hapmap]
rs844886	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[LWK][hapmap]
rs844887	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[LWK][hapmap]
rs844888	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[LWK][hapmap]
rs844889	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[LWK][hapmap]
rs844891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes]
rs844892	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs844894	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844900	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs844907	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs844908	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23085800-23114600	Enhancers	Placenta	Placenta
2	chr20:23102000-23114000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr20:23106800-23114400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr20:23106800-23116400	Weak transcription	Esophagus	oesophagus
5	chr20:23107600-23113200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr20:23109000-23120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:23110400-23113400	Weak transcription	Ovary	ovary
8	chr20:23110400-23113600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr20:23110400-23121600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr20:23110600-23113800	Weak transcription	Fetal Heart	heart
11	chr20:23111000-23120400	Weak transcription	Pancreas	Pancrea
12	chr20:23111600-23113200	Weak transcription	Fetal Lung	lung
13	chr20:23111800-23114000	Enhancers	Lung	lung
14	chr20:23111800-23114600	Flanking Active TSS	K562	blood
15	chr20:23112000-23113200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr20:23112000-23114800	Enhancers	Fetal Muscle Trunk	muscle
17	chr20:23112400-23114200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr20:23112400-23114600	Enhancers	Adipose Nuclei	Adipose
19	chr20:23112400-23114600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr20:23112400-23114600	Enhancers	Right Atrium	heart
21	chr20:23112400-23114800	Enhancers	Dnd41	blood
22	chr20:23112400-23114800	Enhancers	HUVEC	blood vessel
23	chr20:23112600-23113800	Enhancers	Fetal Intestine Large	intestine
24	chr20:23112600-23114200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr20:23112600-23114200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr20:23112600-23114600	Enhancers	Right Ventricle	heart
27	chr20:23112600-23114600	Enhancers	Spleen	Spleen
28	chr20:23112600-23114800	Enhancers	Fetal Muscle Leg	muscle
29	chr20:23112600-23116200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr20:23112600-23120600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr20:23112800-23113200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr20:23112800-23113400	Enhancers	Fetal Intestine Small	intestine
33	chr20:23112800-23114600	Enhancers	Left Ventricle	heart
34	chr20:23112800-23114600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr20:23113000-23113600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr20:23113000-23113600	Enhancers	Small Intestine	intestine
37	chr20:23113000-23114000	Enhancers	Psoas Muscle	Psoas
38	chr20:23113000-23114200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr20:23113000-23114600	Enhancers	Fetal Stomach	stomach

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