Variant report

Variant	rs851027
Chromosome Location	chr6:35990875-35990876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35989631..35991616-chr6:35995503..35997016,2	MCF-7	breast:
2	chr6:35912826..35914853-chr6:35989038..35990987,2	K562	blood:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10085351	0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs10755688	0.83[ASN][1000 genomes]
rs10947581	0.83[ASN][1000 genomes]
rs10947584	0.84[ASN][1000 genomes]
rs10947587	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1100861	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1100862	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1100863	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11758277	0.82[JPT][hapmap]
rs1535428	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2894404	0.85[ASN][1000 genomes]
rs588024	0.84[ASN][1000 genomes]
rs612556	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs625204	0.90[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6457870	0.84[ASN][1000 genomes]
rs6457871	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6457872	0.85[ASN][1000 genomes]
rs6457873	0.95[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs665329	0.84[ASN][1000 genomes]
rs6908108	0.85[ASN][1000 genomes]
rs6908480	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs6915364	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6922865	0.86[JPT][hapmap]
rs6938232	0.83[ASN][1000 genomes]
rs851029	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs851030	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs851031	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs851032	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs851033	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs851034	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs851035	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs851037	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs851039	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs851041	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs851042	0.84[ASN][1000 genomes]
rs851046	0.90[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs851047	0.85[ASN][1000 genomes]
rs851048	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs851050	0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs851051	0.80[ASN][1000 genomes]
rs9368897	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9380542	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9462151	0.90[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs969658	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs851027	SLC26A8	cis	parietal	SCAN
rs851027	SLC26A8	cis	cerebellum	SCAN
rs851027	LEMD2	cis	parietal	SCAN
rs851027	MAPK13	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35964800-35991800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35987200-35991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:35987400-35991400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:35987400-35991600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:35987400-35991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:35988000-35991400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:35988200-35991600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:35988400-35991600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:35990000-35991600	Enhancers	Primary neutrophils fromperipheralblood	blood

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