Variant report

Variant	rs851041
Chromosome Location	chr6:35974936-35974937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35966623..35969146-chr6:35973813..35976111,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10085351	0.93[ASN][1000 genomes]
rs10755688	0.93[ASN][1000 genomes]
rs10947581	0.93[ASN][1000 genomes]
rs10947584	0.94[ASN][1000 genomes]
rs10947587	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1100861	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1100862	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1100863	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1535428	0.94[ASN][1000 genomes]
rs2894404	0.97[ASN][1000 genomes]
rs588024	0.98[ASN][1000 genomes]
rs612556	0.96[ASN][1000 genomes]
rs625204	0.97[ASN][1000 genomes]
rs6457870	0.94[ASN][1000 genomes]
rs6457871	0.94[ASN][1000 genomes]
rs6457872	0.97[ASN][1000 genomes]
rs6457873	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs665329	0.98[ASN][1000 genomes]
rs6908108	0.97[ASN][1000 genomes]
rs6908480	0.97[ASN][1000 genomes]
rs6915364	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6938232	0.95[ASN][1000 genomes]
rs851027	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs851029	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs851030	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs851031	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs851032	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs851033	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs851034	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs851035	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs851037	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs851039	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs851042	0.98[ASN][1000 genomes]
rs851046	0.97[ASN][1000 genomes]
rs851047	0.97[ASN][1000 genomes]
rs851048	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs851050	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs851051	0.92[ASN][1000 genomes]
rs9462151	0.97[ASN][1000 genomes]
rs969658	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	esv3435538	chr6:35974920-35975060	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35964800-35991800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35966000-35976000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:35968400-35982000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:35972800-35976600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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