Variant report

Variant	rs851032
Chromosome Location	chr6:35988203-35988204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10947587	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1100861	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1100862	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1100863	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6457873	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6915364	0.94[EUR][1000 genomes]
rs851027	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs851029	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851030	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851031	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs851033	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851034	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851035	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs851037	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs851039	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs851041	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs851048	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs851050	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9368897	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9380542	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35964800-35991800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:35987200-35991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:35987400-35988400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:35987400-35991400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:35987400-35991600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:35987400-35991600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:35988000-35989600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:35988000-35991400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:35988200-35991600	Weak transcription	Primary monocytes fromperipheralblood	blood

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