Variant report
| Variant | rs853725 |
|---|---|
| Chromosome Location | chr4:149831004-149831005 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10006910 | 0.99[ASN][1000 genomes] |
| rs10033172 | 0.90[ASN][1000 genomes] |
| rs1613060 | 0.99[ASN][1000 genomes] |
| rs1634097 | 0.83[AFR][1000 genomes] |
| rs17025470 | 0.97[ASN][1000 genomes] |
| rs2358679 | 0.99[ASN][1000 genomes] |
| rs4835550 | 0.90[ASN][1000 genomes] |
| rs4835551 | 0.90[ASN][1000 genomes] |
| rs57304754 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6535643 | 0.99[ASN][1000 genomes] |
| rs6535644 | 0.99[ASN][1000 genomes] |
| rs6827690 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs756863 | 0.99[ASN][1000 genomes] |
| rs7678316 | 0.90[ASN][1000 genomes] |
| rs7678724 | 0.90[ASN][1000 genomes] |
| rs853699 | 0.99[ASN][1000 genomes] |
| rs853706 | 0.99[EUR][1000 genomes] |
| rs853710 | 0.96[ASN][1000 genomes] |
| rs853711 | 0.96[ASN][1000 genomes] |
| rs853713 | 0.96[ASN][1000 genomes] |
| rs853727 | 0.99[ASN][1000 genomes] |
| rs853729 | 0.99[ASN][1000 genomes] |
| rs886148 | 0.96[ASN][1000 genomes] |
| rs997583 | 0.97[ASN][1000 genomes] |
| rs9996655 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461677 | chr4:149794284-149903982 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv595686 | chr4:149794284-149903982 | Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv470083 | chr4:149817052-149903982 | Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:149831000-149831600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
