Variant report

Variant	rs886148
Chromosome Location	chr4:149802894-149802895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10006910	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10033172	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1613060	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17025470	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1719688	0.97[EUR][1000 genomes]
rs2358679	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835550	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4835551	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57304754	0.96[ASN][1000 genomes]
rs6535643	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535644	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6827690	0.96[ASN][1000 genomes]
rs756863	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678316	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7678724	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs853699	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs853704	0.97[EUR][1000 genomes]
rs853710	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853711	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853713	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853725	0.96[ASN][1000 genomes]
rs853727	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs853729	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs997583	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9996655	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149794800-149803000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:149801200-149804200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:149801400-149804000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:149801400-149804200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:149801800-149803600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:149802600-149803200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:149802600-149804000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:149802800-149803000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:149802800-149803200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr4:149802800-149804200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:149802800-149804400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:149802800-149804800	Enhancers	HUES48 Cell Line	embryonic stem cell

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