Variant report

Variant	rs854332
Chromosome Location	chr14:25328208-25328209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1272975	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2255003	0.84[AFR][1000 genomes]
rs2480354	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs854330	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs854331	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs854335	0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs854336	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs854339	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs854340	0.90[YRI][hapmap]
rs854343	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs854344	1.00[CEU][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25314600-25333600	Weak transcription	Lung	lung
2	chr14:25315600-25330400	Weak transcription	Brain Angular Gyrus	brain
3	chr14:25316000-25330400	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:25317800-25344000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:25318000-25328400	Weak transcription	Right Ventricle	heart
6	chr14:25318200-25330200	Weak transcription	Fetal Heart	heart
7	chr14:25319000-25330400	Weak transcription	Adipose Nuclei	Adipose
8	chr14:25319600-25344600	Weak transcription	NHDF-Ad	bronchial
9	chr14:25320000-25330200	Weak transcription	HSMMtube	muscle
10	chr14:25321400-25330200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:25321600-25333600	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:25322000-25330400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:25322600-25328400	Weak transcription	Psoas Muscle	Psoas
14	chr14:25323400-25330200	Weak transcription	Fetal Intestine Large	intestine
15	chr14:25323600-25330200	Weak transcription	Fetal Intestine Small	intestine
16	chr14:25323600-25333600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:25324000-25330400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:25324000-25330600	Weak transcription	Pancreas	Pancrea
19	chr14:25324400-25330800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:25324800-25330000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:25325200-25329600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:25325400-25330200	Weak transcription	HepG2	liver
23	chr14:25325600-25329600	Weak transcription	HSMM	muscle
24	chr14:25326200-25328400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr14:25326200-25328600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr14:25326200-25328600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr14:25326400-25328400	Weak transcription	Right Atrium	heart
28	chr14:25326400-25329000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr14:25326400-25330400	Weak transcription	Stomach Mucosa	stomach
30	chr14:25326400-25343600	Weak transcription	Gastric	stomach
31	chr14:25326600-25330200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:25327000-25329200	Enhancers	H9 Cell Line	embryonic stem cell
33	chr14:25327400-25328600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:25327600-25328400	Weak transcription	Left Ventricle	heart
35	chr14:25327600-25330200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr14:25328000-25328400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:25328000-25328400	Enhancers	Colon Smooth Muscle	Colon
38	chr14:25328000-25328800	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr14:25328000-25330600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:25328200-25328600	Enhancers	NH-A	brain
41	chr14:25328200-25329200	Enhancers	Brain Anterior Caudate	brain
42	chr14:25328200-25329200	Enhancers	Fetal Lung	lung

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