Variant report

Variant	rs854335
Chromosome Location	chr14:25330114-25330115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1272975	0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs2255003	0.80[AFR][1000 genomes]
rs2480354	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs854330	0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs854331	0.88[YRI][hapmap];0.95[AFR][1000 genomes]
rs854332	0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs854339	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs854340	0.82[YRI][hapmap]
rs854343	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs854344	0.85[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25314600-25333600	Weak transcription	Lung	lung
2	chr14:25315600-25330400	Weak transcription	Brain Angular Gyrus	brain
3	chr14:25316000-25330400	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:25317800-25344000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:25318200-25330200	Weak transcription	Fetal Heart	heart
6	chr14:25319000-25330400	Weak transcription	Adipose Nuclei	Adipose
7	chr14:25319600-25344600	Weak transcription	NHDF-Ad	bronchial
8	chr14:25320000-25330200	Weak transcription	HSMMtube	muscle
9	chr14:25321400-25330200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:25321600-25333600	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:25322000-25330400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:25323400-25330200	Weak transcription	Fetal Intestine Large	intestine
13	chr14:25323600-25330200	Weak transcription	Fetal Intestine Small	intestine
14	chr14:25323600-25333600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:25324000-25330400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:25324000-25330600	Weak transcription	Pancreas	Pancrea
17	chr14:25324400-25330800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:25325400-25330200	Weak transcription	HepG2	liver
19	chr14:25326400-25330400	Weak transcription	Stomach Mucosa	stomach
20	chr14:25326400-25343600	Weak transcription	Gastric	stomach
21	chr14:25326600-25330200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr14:25327600-25330200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr14:25328000-25330600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr14:25328400-25330200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:25328400-25330400	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:25328400-25331200	Enhancers	Right Ventricle	heart
27	chr14:25328600-25330600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:25328800-25330400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr14:25329000-25330400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr14:25329200-25330200	Weak transcription	Fetal Lung	lung
31	chr14:25329200-25330600	Weak transcription	Left Ventricle	heart
32	chr14:25329200-25340000	Weak transcription	Brain Anterior Caudate	brain
33	chr14:25329200-25341800	Weak transcription	Right Atrium	heart
34	chr14:25329600-25330800	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr14:25329600-25331200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr14:25329600-25331200	Enhancers	HSMM	muscle
37	chr14:25329800-25330400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr14:25329800-25331000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr14:25329800-25331400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:25330000-25330200	Enhancers	NHEK	skin
41	chr14:25330000-25330400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:25330000-25330400	Enhancers	Hela-S3	cervix
43	chr14:25330000-25331000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:25330000-25331200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr14:25330000-25331200	Enhancers	NH-A	brain

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