Variant report

Variant	rs854343
Chromosome Location	chr14:25340384-25340385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1272975	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12884332	0.98[ASN][1000 genomes]
rs2255003	0.81[AFR][1000 genomes]
rs2480354	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs854330	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs854331	1.00[CEU][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs854332	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs854335	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs854336	1.00[CEU][hapmap]
rs854339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854340	0.83[YRI][hapmap]
rs854342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs854344	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25317800-25344000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:25319600-25344600	Weak transcription	NHDF-Ad	bronchial
3	chr14:25326400-25343600	Weak transcription	Gastric	stomach
4	chr14:25329200-25341800	Weak transcription	Right Atrium	heart
5	chr14:25330800-25344000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr14:25331000-25343000	Weak transcription	Brain Angular Gyrus	brain
7	chr14:25331000-25343600	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:25331000-25349800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:25331200-25349800	Weak transcription	HSMM	muscle
10	chr14:25332600-25344400	Weak transcription	Stomach Mucosa	stomach
11	chr14:25333800-25340600	Weak transcription	Right Ventricle	heart
12	chr14:25334200-25344000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr14:25337400-25340800	Weak transcription	Pancreas	Pancrea
14	chr14:25338000-25341600	Weak transcription	Left Ventricle	heart
15	chr14:25339200-25340400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:25340000-25340600	Enhancers	Brain Anterior Caudate	brain
17	chr14:25340000-25341800	Enhancers	Fetal Intestine Small	intestine
18	chr14:25340000-25342000	Enhancers	HepG2	liver
19	chr14:25340200-25341000	Enhancers	Fetal Lung	lung
20	chr14:25340200-25341400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links