Variant report

Variant	rs859653
Chromosome Location	chr1:172652129-172652130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172643682..172645503-chr1:172649687..172652522,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1053381	1.00[CHB][hapmap]
rs10798178	1.00[CHB][hapmap]
rs1102709	1.00[ASN][1000 genomes]
rs1557561	1.00[CHB][hapmap]
rs2859328	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030772	1.00[CHB][hapmap]
rs859649	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859650	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs859651	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs859652	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859654	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859665	1.00[ASN][1000 genomes]
rs859666	1.00[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172648800-172652200	Weak transcription	K562	blood
2	chr1:172649000-172667000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172649600-172652200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr1:172649600-172652400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:172649600-172652400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr1:172650000-172652400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:172650000-172652600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:172650200-172652200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:172650200-172655200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:172651000-172652600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:172651400-172652200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:172651400-172652600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr1:172651600-172652200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:172651600-172652400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:172651600-172652400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:172651600-172652400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:172651600-172652400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:172651600-172652400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:172651600-172652400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr1:172651600-172652400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr1:172651600-172652600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:172651800-172652600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr1:172651800-172652600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr1:172651800-172652600	Enhancers	HSMMtube	muscle
25	chr1:172652000-172652200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:172652000-172652200	Active TSS	Gastric	stomach
27	chr1:172652000-172652200	Enhancers	Left Ventricle	heart
28	chr1:172652000-172652400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr1:172652000-172655400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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