Variant report

Variant	rs859668
Chromosome Location	chr1:172670720-172670721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs12119745	0.86[GIH][hapmap];1.00[JPT][hapmap]
rs12131725	0.84[ASN][1000 genomes]
rs4916193	0.84[ASN][1000 genomes]
rs704843	1.00[JPT][hapmap]
rs859669	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs859670	0.84[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs859668	GPA33	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172655800-172673800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:172665200-172674200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr1:172665200-172674200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:172665200-172675000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:172665600-172672200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:172666200-172675600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:172667400-172673800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:172667400-172674600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr1:172668600-172675000	Enhancers	Primary T cells from cord blood	blood
10	chr1:172669000-172673000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:172669200-172671200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:172669200-172673000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:172669200-172673000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr1:172669200-172673000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr1:172669200-172674400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr1:172669200-172674600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:172669400-172671200	Weak transcription	HMEC	breast
18	chr1:172669400-172673400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:172669400-172673400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:172669400-172674400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:172669400-172679000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:172669600-172671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:172669600-172671800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:172669600-172672800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:172669600-172673200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr1:172669600-172673400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:172669600-172673600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr1:172670000-172673000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr1:172670400-172671000	Enhancers	Fetal Thymus	thymus
30	chr1:172670600-172671200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:172670600-172672800	Weak transcription	Dnd41	blood
32	chr1:172670600-172675200	Enhancers	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links