Variant report

Variant	rs870083
Chromosome Location	chr9:101283827-101283828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10521035	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10819028	0.82[EUR][1000 genomes]
rs10986439	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs10986531	0.83[EUR][1000 genomes]
rs11788298	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12379681	0.81[EUR][1000 genomes]
rs2779562	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs2779567	0.85[AFR][1000 genomes]
rs2779568	0.87[AFR][1000 genomes]
rs2779572	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2779573	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2779574	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs2808566	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs4742732	0.84[EUR][1000 genomes]
rs7023937	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7390587	0.85[EUR][1000 genomes]
rs7857375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs868234	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs944761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101282400-101284000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101282400-101286000	Enhancers	HUVEC	blood vessel
3	chr9:101282600-101284000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:101282600-101284200	Enhancers	Osteobl	bone
5	chr9:101282800-101284000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:101282800-101284000	Enhancers	NHDF-Ad	bronchial
7	chr9:101283800-101288000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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