Variant report
Variant | rs944761 |
---|---|
Chromosome Location | chr9:101279351-101279352 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:101277814..101279969-chr9:101280014..101283409,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10521035 | 1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs10819028 | 0.83[EUR][1000 genomes] |
rs10986439 | 0.80[CHB][hapmap];0.82[JPT][hapmap] |
rs10986473 | 0.80[GIH][hapmap] |
rs10986531 | 0.84[EUR][1000 genomes] |
rs11787646 | 0.85[GIH][hapmap] |
rs11788298 | 0.80[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12379681 | 0.82[EUR][1000 genomes] |
rs2779562 | 0.81[ASW][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes] |
rs2779567 | 0.87[AFR][1000 genomes] |
rs2779568 | 0.88[AFR][1000 genomes] |
rs2779572 | 0.81[ASW][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
rs2779573 | 0.91[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes] |
rs2779574 | 0.96[YRI][hapmap];0.80[AFR][1000 genomes] |
rs2808566 | 0.96[YRI][hapmap];0.88[AFR][1000 genomes] |
rs4742732 | 0.85[EUR][1000 genomes] |
rs7023937 | 0.90[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap] |
rs7390587 | 0.86[EUR][1000 genomes] |
rs7857375 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs868234 | 0.98[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes] |
rs870083 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv430085 | chr9:100928245-101339645 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | nsv831665 | chr9:101170061-101367692 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv614936 | chr9:101182698-101680380 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:101275800-101282800 | Weak transcription | Fetal Brain Male | brain |