Variant report

Variant	rs879479
Chromosome Location	chr21:46400020-46400021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:46394940..46396856-chr21:46398540..46400419,2	MCF-7	breast:
2	chr21:46361267..46363821-chr21:46400005..46402889,2	K562	blood:
3	chr21:46398654..46417262-chr21:46491498..46498908,48	K562	blood:
4	chr21:46368902..46370547-chr21:46397253..46400112,2	MCF-7	breast:
5	chr21:46395684..46402043-chr21:46492415..46498561,16	K562	blood:
6	chr21:46318143..46320481-chr21:46398627..46400161,2	MCF-7	breast:
7	chr21:46288437..46290185-chr21:46399908..46402286,2	MCF-7	breast:
8	chr21:46399144..46400887-chr21:46402281..46403943,2	MCF-7	breast:
9	chr21:46398242..46400941-chr21:46419716..46421408,2	K562	blood:
10	chr21:46398645..46400991-chr21:46405366..46407936,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235374	Chromatin interaction
ENSG00000268856	Chromatin interaction
ENSG00000197381	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs2838748	0.93[AMR][1000 genomes]
rs2877002	1.00[EUR][1000 genomes]
rs421557	0.93[AMR][1000 genomes]
rs55633511	1.00[AMR][1000 genomes]
rs55637516	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55705724	1.00[AMR][1000 genomes]
rs55766163	1.00[EUR][1000 genomes]
rs55775492	1.00[AMR][1000 genomes]
rs55835776	1.00[AMR][1000 genomes]
rs55989453	1.00[AMR][1000 genomes]
rs57590377	1.00[EUR][1000 genomes]
rs57677709	1.00[AMR][1000 genomes]
rs57835164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58009782	1.00[EUR][1000 genomes]
rs58206199	1.00[EUR][1000 genomes]
rs58929845	1.00[AMR][1000 genomes]
rs58951027	1.00[AMR][1000 genomes]
rs59163354	1.00[AMR][1000 genomes]
rs59226008	1.00[AMR][1000 genomes]
rs59267673	1.00[AMR][1000 genomes]
rs59573927	1.00[AMR][1000 genomes]
rs59586139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60725487	1.00[AMR][1000 genomes]
rs61018933	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61674083	0.86[AMR][1000 genomes]
rs7276874	1.00[AMR][1000 genomes]
rs7278617	1.00[AMR][1000 genomes]
rs7279913	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7283630	1.00[AMR][1000 genomes]
rs7283920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73906981	1.00[AMR][1000 genomes]
rs73906983	1.00[AMR][1000 genomes]
rs73906984	0.93[AMR][1000 genomes]
rs73906985	0.86[AMR][1000 genomes]
rs73907002	1.00[AMR][1000 genomes]
rs73907203	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73907212	1.00[EUR][1000 genomes]
rs73909903	1.00[AMR][1000 genomes]
rs73909905	1.00[AMR][1000 genomes]
rs73909911	0.86[AMR][1000 genomes]
rs8130435	1.00[AMR][1000 genomes]
rs8133480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8134093	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv1056513	chr21:46254075-46442759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv913969	chr21:46279505-46472929	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv913970	chr21:46305175-46487831	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv913974	chr21:46306161-46430792	Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv913975	chr21:46306161-46459432	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv913976	chr21:46306161-46487831	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	nsv834110	chr21:46316183-46505151	Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
9	nsv1064518	chr21:46317690-46413159	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
10	nsv913977	chr21:46335761-46454391	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv913978	chr21:46335761-46466674	Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv913979	chr21:46335761-46472929	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
13	nsv913980	chr21:46337565-46454391	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv913981	chr21:46344426-46408790	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
15	nsv913982	chr21:46344426-46430792	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv913984	chr21:46344426-46435610	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
17	nsv913983	chr21:46344426-46440385	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv913985	chr21:46344426-46448142	Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	nsv913986	chr21:46344426-46466674	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	nsv913987	chr21:46344426-46472929	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
21	nsv913988	chr21:46356816-46408790	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
22	nsv913989	chr21:46356816-46430792	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
23	nsv913990	chr21:46356816-46448142	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	nsv913991	chr21:46356816-46472929	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
25	nsv544480	chr21:46364856-46413159	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv913992	chr21:46366547-46408790	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
27	nsv913993	chr21:46376528-46448142	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	nsv913994	chr21:46376528-46454391	Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	nsv913995	chr21:46376528-46466674	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
30	nsv913996	chr21:46383941-46459432	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
31	nsv913997	chr21:46383941-46472929	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
32	nsv913998	chr21:46393090-46441947	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
33	esv1829529	chr21:46396906-46402323	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
34	nsv587818	chr21:46396960-46448253	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	esv3389052	chr21:46397349-46400097	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46380200-46402600	Weak transcription	Aorta	Aorta
2	chr21:46382800-46404800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr21:46385000-46401400	Strong transcription	Thymus	Thymus
4	chr21:46386400-46400600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr21:46386800-46400600	Weak transcription	Small Intestine	intestine
6	chr21:46390200-46400400	Weak transcription	Right Atrium	heart
7	chr21:46390200-46403200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr21:46390200-46406400	Weak transcription	Brain Anterior Caudate	brain
9	chr21:46390400-46400600	Weak transcription	Fetal Lung	lung
10	chr21:46390400-46402600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr21:46390400-46402600	Weak transcription	HUVEC	blood vessel
12	chr21:46390400-46402800	Weak transcription	Osteobl	bone
13	chr21:46390400-46408600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr21:46390600-46402800	Weak transcription	NHLF	lung
15	chr21:46391000-46402600	Weak transcription	A549	lung
16	chr21:46391000-46403600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr21:46391200-46402800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr21:46391800-46402600	Weak transcription	Fetal Brain Male	brain
19	chr21:46392200-46402600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr21:46393000-46402600	Weak transcription	Ovary	ovary
21	chr21:46393000-46409200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr21:46393200-46400400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr21:46393200-46401200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr21:46393200-46402400	Weak transcription	NH-A	brain
25	chr21:46394400-46402400	Weak transcription	Hela-S3	cervix
26	chr21:46395200-46411400	Weak transcription	Liver	Liver
27	chr21:46395400-46404000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr21:46395600-46402800	Weak transcription	Duodenum Mucosa	Duodenum
29	chr21:46395600-46403000	Weak transcription	Fetal Thymus	thymus
30	chr21:46395800-46402600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr21:46396000-46401400	Weak transcription	Pancreas	Pancrea
32	chr21:46396600-46402400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr21:46396600-46402400	Weak transcription	Left Ventricle	heart
34	chr21:46396600-46402400	Weak transcription	HSMMtube	muscle
35	chr21:46397000-46400800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr21:46397000-46402200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr21:46397000-46402400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr21:46397000-46411400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr21:46397200-46400600	Weak transcription	Fetal Brain Female	brain
40	chr21:46397200-46401600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr21:46397200-46402400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr21:46397200-46403400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr21:46397200-46404400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr21:46397200-46404400	Weak transcription	Brain Hippocampus Middle	brain
45	chr21:46397400-46401400	Weak transcription	Primary T cells from cord blood	blood
46	chr21:46397400-46404200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr21:46397600-46405000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr21:46397800-46401400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr21:46397800-46402800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr21:46397800-46404400	Weak transcription	Brain Inferior Temporal Lobe	brain

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