Variant report

Variant	rs882136
Chromosome Location	chr10:94517759-94517760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94515977..94518036-chr10:94533263..94535173,2	K562	blood:
2	chr10:94517024..94521206-chr10:94522377..94524965,5	K562	blood:
3	chr10:94514784..94516606-chr10:94517572..94519517,2	K562	blood:
4	chr10:94517002..94518734-chr10:94589088..94591962,3	K562	blood:
5	chr10:94506528..94510913-chr10:94515438..94518140,4	K562	blood:
6	chr10:94454886..94456957-chr10:94516147..94518096,2	K562	blood:
7	chr10:94350476..94356035-chr10:94515020..94520020,6	K562	blood:
8	chr10:94450040..94451749-chr10:94517680..94520139,2	MCF-7	breast:
9	chr10:94460041..94462879-chr10:94516559..94518364,2	K562	blood:
10	chr10:94348631..94351976-chr10:94517080..94521274,3	K562	blood:
11	chr10:94501170..94503294-chr10:94517655..94519788,2	K562	blood:
12	chr10:94515716..94518429-chr10:94608106..94610155,2	K562	blood:
13	chr10:94448814..94452346-chr10:94514330..94519117,6	K562	blood:
14	chr10:94448776..94451564-chr10:94514826..94518516,6	K562	blood:
15	chr10:94515128..94517989-chr10:94586362..94588868,2	K562	blood:
16	chr10:94460041..94464293-chr10:94516357..94518364,3	K562	blood:
17	chr10:94517234..94521779-chr10:94589479..94592725,5	K562	blood:
18	chr10:94454328..94456440-chr10:94516078..94520256,4	K562	blood:
19	chr10:94515577..94518061-chr10:94639001..94640568,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11187165	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187171	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488056	0.88[EUR][1000 genomes]
rs35235479	0.81[EUR][1000 genomes]
rs4933239	0.89[ASN][1000 genomes]
rs7091916	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94514600-94518000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:94514800-94518200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr10:94515200-94518000	Enhancers	Placenta	Placenta
4	chr10:94515400-94518000	Enhancers	Fetal Thymus	thymus
5	chr10:94515600-94517800	Enhancers	Fetal Muscle Leg	muscle
6	chr10:94515600-94518000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr10:94515600-94518000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr10:94515600-94518000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:94515600-94518000	Enhancers	Adipose Nuclei	Adipose
10	chr10:94515600-94518000	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr10:94515600-94518000	Enhancers	Fetal Stomach	stomach
12	chr10:94515600-94518000	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr10:94515600-94518400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr10:94515600-94518600	Flanking Active TSS	GM12878-XiMat	blood
15	chr10:94515800-94518000	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr10:94515800-94519600	Enhancers	A549	lung
17	chr10:94516000-94518000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:94516200-94518000	Enhancers	Lung	lung
19	chr10:94516200-94518200	Enhancers	Right Atrium	heart
20	chr10:94516400-94517800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:94516400-94518000	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:94516400-94518000	Enhancers	Left Ventricle	heart
23	chr10:94516400-94518000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:94516400-94518000	Enhancers	Spleen	Spleen
25	chr10:94516400-94518400	Flanking Active TSS	K562	blood
26	chr10:94516600-94517800	Enhancers	Right Ventricle	heart
27	chr10:94516600-94518000	Enhancers	Psoas Muscle	Psoas
28	chr10:94516600-94518000	Enhancers	Small Intestine	intestine
29	chr10:94516600-94518400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:94516800-94518800	Enhancers	Colon Smooth Muscle	Colon
31	chr10:94517000-94521200	Weak transcription	Aorta	Aorta
32	chr10:94517000-94521800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:94517200-94518000	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr10:94517200-94520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:94517200-94520400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr10:94517200-94521400	Enhancers	HepG2	liver
37	chr10:94517400-94518000	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr10:94517400-94518200	Enhancers	Hela-S3	cervix
39	chr10:94517400-94518400	Weak transcription	Stomach Mucosa	stomach
40	chr10:94517400-94519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:94517400-94520200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:94517400-94520200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:94517400-94520200	Weak transcription	NH-A	brain
44	chr10:94517400-94520200	Weak transcription	Osteobl	bone
45	chr10:94517400-94520400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:94517400-94520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:94517400-94520800	Enhancers	Primary B cells from peripheral blood	blood
48	chr10:94517400-94521400	Weak transcription	Brain Angular Gyrus	brain
49	chr10:94517400-94522600	Enhancers	Primary hematopoietic stem cells	blood
50	chr10:94517600-94517800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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