Variant report

Variant	rs2488056
Chromosome Location	chr10:94531524-94531525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11187161	1.00[ASN][1000 genomes]
rs11187162	1.00[ASN][1000 genomes]
rs11187164	1.00[ASN][1000 genomes]
rs11187165	0.89[EUR][1000 genomes]
rs11187166	1.00[ASN][1000 genomes]
rs11187167	1.00[ASN][1000 genomes]
rs11187169	1.00[ASN][1000 genomes]
rs11187170	1.00[ASN][1000 genomes]
rs11187171	0.89[EUR][1000 genomes]
rs11187173	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187179	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261163	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12355562	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358931	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763565	1.00[ASN][1000 genomes]
rs12763786	1.00[ASN][1000 genomes]
rs12764758	1.00[ASN][1000 genomes]
rs12765131	1.00[ASN][1000 genomes]
rs12766137	0.92[ASN][1000 genomes]
rs12779884	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779990	1.00[ASN][1000 genomes]
rs12780621	1.00[ASN][1000 genomes]
rs12784232	1.00[ASN][1000 genomes]
rs2488066	0.92[ASN][1000 genomes]
rs2497351	1.00[ASN][1000 genomes]
rs34269987	1.00[ASN][1000 genomes]
rs34478558	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34566437	1.00[ASN][1000 genomes]
rs34636435	1.00[ASN][1000 genomes]
rs34664889	1.00[ASN][1000 genomes]
rs35001517	1.00[ASN][1000 genomes]
rs35039517	0.92[ASN][1000 genomes]
rs35235479	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016244	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36082564	1.00[ASN][1000 genomes]
rs4933239	0.80[EUR][1000 genomes]
rs55851824	1.00[ASN][1000 genomes]
rs55951294	1.00[ASN][1000 genomes]
rs56026908	1.00[ASN][1000 genomes]
rs61862826	1.00[ASN][1000 genomes]
rs6583840	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67412949	1.00[ASN][1000 genomes]
rs7091916	0.89[EUR][1000 genomes]
rs71480841	1.00[ASN][1000 genomes]
rs7896131	1.00[ASN][1000 genomes]
rs882136	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94531400-94531600	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr10:94531400-94531800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links