Variant report

Variant	rs12784232
Chromosome Location	chr10:94516468-94516469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94511052..94514419-chr10:94514793..94517097,3	K562	blood:
2	chr10:94515977..94518036-chr10:94533263..94535173,2	K562	blood:
3	chr10:94506528..94510913-chr10:94515438..94518140,4	K562	blood:
4	chr10:94454886..94456957-chr10:94516147..94518096,2	K562	blood:
5	chr10:94350476..94356035-chr10:94515020..94520020,6	K562	blood:
6	chr10:94515716..94518429-chr10:94608106..94610155,2	K562	blood:
7	chr10:94514784..94516606-chr10:94517572..94519517,2	K562	blood:
8	chr10:94516220..94517755-chr10:94579937..94582278,2	K562	blood:
9	chr10:94448814..94452346-chr10:94514330..94519117,6	K562	blood:
10	chr10:94448776..94451564-chr10:94514826..94518516,6	K562	blood:
11	chr10:94515128..94517989-chr10:94586362..94588868,2	K562	blood:
12	chr10:94515342..94517333-chr10:94557588..94560376,2	K562	blood:
13	chr10:94460041..94464293-chr10:94516357..94518364,3	K562	blood:
14	chr10:94454328..94456440-chr10:94516078..94520256,4	K562	blood:
15	chr10:94515577..94518061-chr10:94639001..94640568,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11187161	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187164	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187167	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187169	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187170	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187173	1.00[ASN][1000 genomes]
rs11187179	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12261163	0.84[ASN][1000 genomes]
rs12355562	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12358931	1.00[ASN][1000 genomes]
rs12763565	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763786	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764758	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766137	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12779884	1.00[ASN][1000 genomes]
rs12779990	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780621	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488056	1.00[ASN][1000 genomes]
rs2488066	0.92[ASN][1000 genomes]
rs2497351	0.85[CHD][hapmap];1.00[ASN][1000 genomes]
rs34269987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478558	1.00[ASN][1000 genomes]
rs34566437	1.00[ASN][1000 genomes]
rs34636435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34664889	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35001517	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35039517	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35235479	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016244	1.00[ASN][1000 genomes]
rs36082564	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565815	0.91[EUR][1000 genomes]
rs55851824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55951294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56026908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862826	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583840	1.00[ASN][1000 genomes]
rs67412949	1.00[ASN][1000 genomes]
rs71480841	1.00[ASN][1000 genomes]
rs7896131	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94512200-94516600	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:94513400-94517200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:94514600-94518000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:94514800-94518200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:94515200-94518000	Enhancers	Placenta	Placenta
6	chr10:94515400-94518000	Enhancers	Fetal Thymus	thymus
7	chr10:94515600-94516600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:94515600-94516600	Weak transcription	Small Intestine	intestine
9	chr10:94515600-94516800	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:94515600-94517200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:94515600-94517200	Enhancers	Dnd41	blood
12	chr10:94515600-94517200	Flanking Active TSS	HepG2	liver
13	chr10:94515600-94517400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:94515600-94517400	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr10:94515600-94517600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:94515600-94517600	Weak transcription	Liver	Liver
17	chr10:94515600-94517600	Enhancers	Fetal Lung	lung
18	chr10:94515600-94517600	Flanking Active TSS	HUVEC	blood vessel
19	chr10:94515600-94517800	Enhancers	Fetal Muscle Leg	muscle
20	chr10:94515600-94518000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr10:94515600-94518000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr10:94515600-94518000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:94515600-94518000	Enhancers	Adipose Nuclei	Adipose
24	chr10:94515600-94518000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr10:94515600-94518000	Enhancers	Fetal Stomach	stomach
26	chr10:94515600-94518000	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr10:94515600-94518400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr10:94515600-94518600	Flanking Active TSS	GM12878-XiMat	blood
29	chr10:94515800-94516600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr10:94515800-94517200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:94515800-94517200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr10:94515800-94517400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:94515800-94517400	Enhancers	Fetal Heart	heart
34	chr10:94515800-94518000	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr10:94515800-94519600	Enhancers	A549	lung
36	chr10:94516000-94517400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr10:94516000-94517400	Enhancers	Primary T cells from cord blood	blood
38	chr10:94516000-94517400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:94516000-94517400	Enhancers	Fetal Kidney	kidney
40	chr10:94516000-94518000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr10:94516200-94516800	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr10:94516200-94517200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:94516200-94517400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:94516200-94517400	Enhancers	Fetal Intestine Small	intestine
45	chr10:94516200-94517400	Flanking Active TSS	Hela-S3	cervix
46	chr10:94516200-94517400	Enhancers	NH-A	brain
47	chr10:94516200-94517400	Enhancers	Osteobl	bone
48	chr10:94516200-94518000	Enhancers	Lung	lung
49	chr10:94516200-94518200	Enhancers	Right Atrium	heart
50	chr10:94516400-94516800	Flanking Active TSS	Colon Smooth Muscle	Colon

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