Variant report

Variant	rs12779990
Chromosome Location	chr10:94518670-94518671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94517024..94521206-chr10:94522377..94524965,5	K562	blood:
2	chr10:94514784..94516606-chr10:94517572..94519517,2	K562	blood:
3	chr10:94517002..94518734-chr10:94589088..94591962,3	K562	blood:
4	chr10:94454328..94456440-chr10:94518321..94520256,2	K562	blood:
5	chr10:94350476..94356035-chr10:94515020..94520020,6	K562	blood:
6	chr10:94450040..94451749-chr10:94517680..94520139,2	MCF-7	breast:
7	chr10:94348631..94351976-chr10:94517080..94521274,3	K562	blood:
8	chr10:94501170..94503294-chr10:94517655..94519788,2	K562	blood:
9	chr10:94448814..94452346-chr10:94514330..94519117,6	K562	blood:
10	chr10:94517234..94521779-chr10:94589479..94592725,5	K562	blood:
11	chr10:94454328..94456440-chr10:94516078..94520256,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000152804	Chromatin interaction
ENSG00000138190	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11187161	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187164	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187167	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187169	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187170	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187173	1.00[ASN][1000 genomes]
rs11187179	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12261163	0.84[ASN][1000 genomes]
rs12355562	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12358931	1.00[ASN][1000 genomes]
rs12763565	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763786	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764758	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765131	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766137	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12779884	1.00[ASN][1000 genomes]
rs12780621	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784232	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488056	1.00[ASN][1000 genomes]
rs2488066	0.92[ASN][1000 genomes]
rs2497351	0.85[CHD][hapmap];1.00[ASN][1000 genomes]
rs34269987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478558	1.00[ASN][1000 genomes]
rs34566437	1.00[ASN][1000 genomes]
rs34636435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34664889	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35001517	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35039517	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35235479	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016244	1.00[ASN][1000 genomes]
rs36082564	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565815	0.91[EUR][1000 genomes]
rs55851824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55951294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56026908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862826	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583840	1.00[ASN][1000 genomes]
rs67412949	1.00[ASN][1000 genomes]
rs71480841	1.00[ASN][1000 genomes]
rs7896131	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94515800-94519600	Enhancers	A549	lung
2	chr10:94516800-94518800	Enhancers	Colon Smooth Muscle	Colon
3	chr10:94517000-94521200	Weak transcription	Aorta	Aorta
4	chr10:94517000-94521800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:94517200-94520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:94517200-94520400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:94517200-94521400	Enhancers	HepG2	liver
8	chr10:94517400-94519800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:94517400-94520200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:94517400-94520200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:94517400-94520200	Weak transcription	NH-A	brain
12	chr10:94517400-94520200	Weak transcription	Osteobl	bone
13	chr10:94517400-94520400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:94517400-94520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:94517400-94520800	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:94517400-94521400	Weak transcription	Brain Angular Gyrus	brain
17	chr10:94517400-94522600	Enhancers	Primary hematopoietic stem cells	blood
18	chr10:94517600-94520200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:94517800-94520200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:94517800-94522200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:94518000-94518800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:94518000-94519800	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr10:94518000-94520000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:94518000-94520200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94518000-94520200	Weak transcription	Adipose Nuclei	Adipose
26	chr10:94518000-94520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:94518000-94520200	Weak transcription	Placenta	Placenta
28	chr10:94518000-94520200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:94518000-94520200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr10:94518000-94520400	Enhancers	Primary B cells from cord blood	blood
31	chr10:94518000-94521400	Weak transcription	Brain Hippocampus Middle	brain
32	chr10:94518000-94521600	Weak transcription	Brain Anterior Caudate	brain
33	chr10:94518000-94521800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:94518000-94522800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr10:94518200-94520200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:94518200-94520200	Weak transcription	Hela-S3	cervix
37	chr10:94518400-94518800	Enhancers	Stomach Mucosa	stomach
38	chr10:94518400-94519000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr10:94518400-94519200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr10:94518400-94520000	Weak transcription	HUVEC	blood vessel
41	chr10:94518400-94520200	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:94518400-94520600	Enhancers	K562	blood
43	chr10:94518600-94518800	Enhancers	GM12878-XiMat	blood

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