Variant report

Variant	rs11187161
Chromosome Location	chr10:94508343-94508344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94505490..94508410-chr10:94509221..94513628,4	K562	blood:
2	chr10:94506528..94510913-chr10:94515438..94518140,4	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11187162	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187164	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187166	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187167	0.85[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187169	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187170	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187173	1.00[ASN][1000 genomes]
rs11187179	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12261163	0.84[ASN][1000 genomes]
rs12355562	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12358931	1.00[ASN][1000 genomes]
rs12763565	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763786	1.00[ASN][1000 genomes]
rs12764758	1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765131	1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766137	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12779884	1.00[ASN][1000 genomes]
rs12779990	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780621	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784232	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488056	1.00[ASN][1000 genomes]
rs2488066	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2497351	0.87[CEU][hapmap];0.85[CHD][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34269987	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478558	1.00[ASN][1000 genomes]
rs34566437	1.00[ASN][1000 genomes]
rs34636435	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34664889	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35001517	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35039517	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35235479	1.00[ASN][1000 genomes]
rs36016244	1.00[ASN][1000 genomes]
rs36082564	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55851824	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55951294	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56026908	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862826	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583840	1.00[ASN][1000 genomes]
rs67412949	1.00[ASN][1000 genomes]
rs71480841	1.00[ASN][1000 genomes]
rs7896131	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11187161	IFIT1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94502600-94510800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:94504200-94510600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:94506000-94508600	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:94506400-94509600	Enhancers	K562	blood
5	chr10:94506800-94508400	Enhancers	Spleen	Spleen
6	chr10:94506800-94508600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:94506800-94508800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:94507000-94508400	Enhancers	Primary T cells from cord blood	blood
9	chr10:94507000-94508800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:94507200-94508400	Bivalent Enhancer	HepG2	liver
11	chr10:94507400-94508600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:94507800-94513200	Weak transcription	Primary B cells from cord blood	blood

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