Variant report

Variant	rs12763565
Chromosome Location	chr10:94520143-94520144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94517024..94521206-chr10:94522377..94524965,5	K562	blood:
2	chr10:94454328..94456440-chr10:94518321..94520256,2	K562	blood:
3	chr10:94519112..94521506-chr10:94526689..94529605,3	K562	blood:
4	chr10:94348631..94351976-chr10:94517080..94521274,3	K562	blood:
5	chr10:94518763..94521506-chr10:94525236..94529562,3	K562	blood:
6	chr10:94517234..94521779-chr10:94589479..94592725,5	K562	blood:
7	chr10:94454328..94456440-chr10:94516078..94520256,4	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11187161	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187162	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187164	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187166	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187167	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187169	0.83[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187170	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187173	1.00[ASN][1000 genomes]
rs11187179	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12261163	0.84[ASN][1000 genomes]
rs12355562	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12358931	1.00[ASN][1000 genomes]
rs12763786	0.83[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764758	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12765131	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12766137	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12779884	1.00[ASN][1000 genomes]
rs12779990	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12780621	0.82[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12784232	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488056	1.00[ASN][1000 genomes]
rs2488066	0.92[ASN][1000 genomes]
rs2497351	1.00[ASN][1000 genomes]
rs34269987	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478558	1.00[ASN][1000 genomes]
rs34566437	1.00[ASN][1000 genomes]
rs34636435	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34664889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35001517	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35039517	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35235479	1.00[ASN][1000 genomes]
rs36016244	1.00[ASN][1000 genomes]
rs36082564	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565815	0.94[EUR][1000 genomes]
rs55851824	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55951294	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56026908	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61862826	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583840	1.00[ASN][1000 genomes]
rs67412949	1.00[ASN][1000 genomes]
rs71480841	1.00[ASN][1000 genomes]
rs7896131	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94517000-94521200	Weak transcription	Aorta	Aorta
2	chr10:94517000-94521800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:94517200-94520200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:94517200-94520400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:94517200-94521400	Enhancers	HepG2	liver
6	chr10:94517400-94520200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:94517400-94520200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:94517400-94520200	Weak transcription	NH-A	brain
9	chr10:94517400-94520200	Weak transcription	Osteobl	bone
10	chr10:94517400-94520400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:94517400-94520600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:94517400-94520800	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:94517400-94521400	Weak transcription	Brain Angular Gyrus	brain
14	chr10:94517400-94522600	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:94517600-94520200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:94517800-94520200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:94517800-94522200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:94518000-94520200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:94518000-94520200	Weak transcription	Adipose Nuclei	Adipose
20	chr10:94518000-94520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:94518000-94520200	Weak transcription	Placenta	Placenta
22	chr10:94518000-94520200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:94518000-94520200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:94518000-94520400	Enhancers	Primary B cells from cord blood	blood
25	chr10:94518000-94521400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:94518000-94521600	Weak transcription	Brain Anterior Caudate	brain
27	chr10:94518000-94521800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:94518000-94522800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr10:94518200-94520200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:94518200-94520200	Weak transcription	Hela-S3	cervix
31	chr10:94518400-94520200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr10:94518400-94520600	Enhancers	K562	blood
33	chr10:94518800-94520200	Weak transcription	Colon Smooth Muscle	Colon
34	chr10:94518800-94520200	Weak transcription	Stomach Mucosa	stomach
35	chr10:94519400-94520400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:94519600-94520200	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr10:94519800-94521200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr10:94519800-94522000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:94520000-94520200	Enhancers	A549	lung
40	chr10:94520000-94521400	Enhancers	HUVEC	blood vessel
41	chr10:94520000-94521800	Enhancers	NHLF	lung

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