Variant report

Variant	rs6583840
Chromosome Location	chr10:94542584-94542585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94540147..94545458-chr10:94548038..94552843,7	K562	blood:
2	chr10:94540362..94542725-chr10:94548038..94549947,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11187161	1.00[ASN][1000 genomes]
rs11187162	1.00[ASN][1000 genomes]
rs11187164	1.00[ASN][1000 genomes]
rs11187166	1.00[ASN][1000 genomes]
rs11187167	0.85[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11187169	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11187170	1.00[ASN][1000 genomes]
rs11187173	1.00[ASN][1000 genomes]
rs11187179	0.88[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261163	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12355562	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358931	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763565	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12763786	1.00[ASN][1000 genomes]
rs12764758	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12765131	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12766137	0.92[ASN][1000 genomes]
rs12779884	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779990	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12780621	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12784232	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2488056	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488066	0.92[ASN][1000 genomes]
rs2497351	0.85[CHD][hapmap];1.00[ASN][1000 genomes]
rs34269987	1.00[ASN][1000 genomes]
rs34478558	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34566437	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34636435	1.00[ASN][1000 genomes]
rs34664889	1.00[ASN][1000 genomes]
rs35001517	1.00[ASN][1000 genomes]
rs35039517	0.92[ASN][1000 genomes]
rs35235479	1.00[ASN][1000 genomes]
rs36016244	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36082564	1.00[ASN][1000 genomes]
rs4933239	0.94[EUR][1000 genomes]
rs55851824	1.00[ASN][1000 genomes]
rs55951294	1.00[ASN][1000 genomes]
rs56026908	1.00[ASN][1000 genomes]
rs61862826	1.00[ASN][1000 genomes]
rs67412949	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71480841	1.00[ASN][1000 genomes]
rs7896131	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2761615	chr10:94538960-94545531	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6583840	IFIT1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94542000-94542600	Enhancers	Primary B cells from peripheral blood	blood

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