Variant report

Variant	rs4933239
Chromosome Location	chr10:94550957-94550958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11187165	0.89[ASN][1000 genomes]
rs11187171	0.89[ASN][1000 genomes]
rs11187179	0.83[CEU][hapmap]
rs12241566	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12249224	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12261163	0.86[EUR][1000 genomes]
rs12779884	0.86[EUR][1000 genomes]
rs12779990	0.85[CHD][hapmap]
rs17448243	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2422067	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2488056	0.80[EUR][1000 genomes]
rs34566437	0.89[EUR][1000 genomes]
rs6583840	0.94[EUR][1000 genomes]
rs67412949	0.89[EUR][1000 genomes]
rs7091916	0.89[ASN][1000 genomes]
rs7896131	0.89[EUR][1000 genomes]
rs882136	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4933239	IFIT1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94546600-94551200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:94546800-94551200	Enhancers	Primary B cells from cord blood	blood
3	chr10:94547000-94551400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:94548600-94552000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:94549400-94551200	Enhancers	Primary hematopoietic stem cells	blood
6	chr10:94550800-94552000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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