Variant report

Variant	rs17448243
Chromosome Location	chr10:94570354-94570355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12241566	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249224	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17377483	0.81[CEU][hapmap]
rs2422067	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34566437	0.83[EUR][1000 genomes]
rs4933239	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67412949	0.83[EUR][1000 genomes]
rs71480841	0.96[EUR][1000 genomes]
rs7896131	0.83[EUR][1000 genomes]
rs882136	0.82[JPT][hapmap]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94566200-94571800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:94569400-94570600	Enhancers	Fetal Intestine Large	intestine
3	chr10:94569600-94570400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:94569600-94570400	Enhancers	Fetal Intestine Small	intestine
5	chr10:94569600-94570400	Bivalent Enhancer	Stomach Mucosa	stomach
6	chr10:94569600-94570800	Bivalent Enhancer	GM12878-XiMat	blood
7	chr10:94569600-94571600	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:94570000-94571000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:94570200-94570600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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