Variant report

Variant	rs12355562
Chromosome Location	chr10:94540455-94540456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94540147..94545458-chr10:94548038..94552843,7	K562	blood:
2	chr10:94449785..94452666-chr10:94539359..94541248,2	K562	blood:
3	chr10:94540362..94542725-chr10:94548038..94549947,2	K562	blood:

Variant related genes	Relation type
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11187161	1.00[ASN][1000 genomes]
rs11187162	1.00[ASN][1000 genomes]
rs11187164	1.00[ASN][1000 genomes]
rs11187166	1.00[ASN][1000 genomes]
rs11187167	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11187169	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11187170	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11187173	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187179	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12261163	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12358931	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763565	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12763786	1.00[ASN][1000 genomes]
rs12764758	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12765131	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12766137	0.92[ASN][1000 genomes]
rs12779884	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12779990	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12780621	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12784232	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2488056	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2488066	0.92[ASN][1000 genomes]
rs2497351	1.00[ASN][1000 genomes]
rs34269987	1.00[ASN][1000 genomes]
rs34478558	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34566437	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34636435	1.00[ASN][1000 genomes]
rs34664889	1.00[ASN][1000 genomes]
rs35001517	1.00[ASN][1000 genomes]
rs35039517	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35235479	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36016244	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36082564	1.00[ASN][1000 genomes]
rs55851824	1.00[ASN][1000 genomes]
rs55951294	1.00[ASN][1000 genomes]
rs56026908	1.00[ASN][1000 genomes]
rs61862826	1.00[ASN][1000 genomes]
rs6583840	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67412949	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71480841	1.00[ASN][1000 genomes]
rs7896131	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2761615	chr10:94538960-94545531	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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