Variant report

Variant	rs888101
Chromosome Location	chr2:37732062-37732063
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:149223828..149224363-chr2:37731909..37732409,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11124584	0.83[ASN][1000 genomes]
rs11124585	0.83[ASN][1000 genomes]
rs11124586	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1113496	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs11681193	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11686382	0.86[ASN][1000 genomes]
rs11693033	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11694646	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11890793	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12992054	0.87[ASN][1000 genomes]
rs12992110	0.81[ASN][1000 genomes]
rs12992431	0.88[ASN][1000 genomes]
rs12992720	0.89[ASN][1000 genomes]
rs12993204	0.89[ASN][1000 genomes]
rs12995330	0.82[ASN][1000 genomes]
rs13002004	0.87[ASN][1000 genomes]
rs13002345	0.87[ASN][1000 genomes]
rs13016394	0.89[ASN][1000 genomes]
rs13016831	0.89[ASN][1000 genomes]
rs2192940	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2192942	0.86[EUR][1000 genomes]
rs2192949	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4384766	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4503967	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58367831	0.91[ASN][1000 genomes]
rs62135576	0.85[ASN][1000 genomes]
rs6734373	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6746868	0.82[EUR][1000 genomes]
rs72793797	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72793802	0.82[ASN][1000 genomes]
rs7562026	0.89[ASN][1000 genomes]
rs7562161	0.89[ASN][1000 genomes]
rs7574012	0.82[EUR][1000 genomes]
rs7582204	0.82[EUR][1000 genomes]
rs7582414	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7584987	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9678172	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37709600-37738000	Weak transcription	Liver	Liver
2	chr2:37727800-37733200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:37728400-37733200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:37729200-37733200	Weak transcription	NHDF-Ad	bronchial
5	chr2:37731000-37733200	Enhancers	Fetal Heart	heart
6	chr2:37731000-37735800	Enhancers	Fetal Stomach	stomach
7	chr2:37731400-37732400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:37731600-37733400	Enhancers	HSMMtube	muscle
9	chr2:37732000-37733000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr2:37732000-37734400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:37732000-37734400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:37732000-37735600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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