Variant report

Variant	rs11890793
Chromosome Location	chr2:37715860-37715861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37712267..37714639-chr2:37715187..37717308,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10204024	0.81[JPT][hapmap]
rs11124584	0.88[ASN][1000 genomes]
rs11124585	0.88[ASN][1000 genomes]
rs11124586	0.82[EUR][1000 genomes]
rs11681193	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11686382	0.82[ASN][1000 genomes]
rs11693033	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11694646	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12992054	0.92[ASN][1000 genomes]
rs12992110	0.86[ASN][1000 genomes]
rs12992431	0.93[ASN][1000 genomes]
rs12992720	0.94[ASN][1000 genomes]
rs12993204	0.94[ASN][1000 genomes]
rs12995330	0.87[ASN][1000 genomes]
rs13002004	0.83[ASN][1000 genomes]
rs13002345	0.83[ASN][1000 genomes]
rs13016394	0.94[ASN][1000 genomes]
rs13016831	0.95[ASN][1000 genomes]
rs2192940	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192942	0.80[EUR][1000 genomes]
rs2192949	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4384766	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4503967	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58367831	0.96[ASN][1000 genomes]
rs62135576	0.81[ASN][1000 genomes]
rs6734373	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6746868	0.81[EUR][1000 genomes]
rs72793797	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7562026	0.94[ASN][1000 genomes]
rs7562161	0.94[ASN][1000 genomes]
rs7574012	0.82[EUR][1000 genomes]
rs7582204	0.82[EUR][1000 genomes]
rs7582414	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7584987	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs888101	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9678172	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37709600-37738000	Weak transcription	Liver	Liver
2	chr2:37715400-37717200	Enhancers	Fetal Heart	heart
3	chr2:37715600-37716200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:37715600-37716800	Enhancers	Fetal Lung	lung
5	chr2:37715800-37716800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:37715800-37716800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:37715800-37716800	Enhancers	NHDF-Ad	bronchial
8	chr2:37715800-37716800	Enhancers	NHLF	lung

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