Variant report

Variant	rs890162
Chromosome Location	chr10:95666458-95666459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95655301..95659438-chr10:95663461..95667580,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1046414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748616	0.89[ASN][1000 genomes]
rs1425302	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1477536	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1924702	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093927	0.89[ASN][1000 genomes]
rs2422329	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4919543	0.89[ASN][1000 genomes]
rs6583920	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7098106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714187	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7903507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913668	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922879	0.91[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95654800-95667800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95654800-95671400	Weak transcription	NH-A	brain
3	chr10:95654800-95673600	Weak transcription	NHDF-Ad	bronchial
4	chr10:95654800-95676200	Weak transcription	Fetal Kidney	kidney
5	chr10:95654800-95676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:95654800-95677000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:95655000-95666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:95655000-95667000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:95655000-95668000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:95655000-95668200	Weak transcription	Brain Angular Gyrus	brain
11	chr10:95655000-95671000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:95655000-95672800	Weak transcription	Psoas Muscle	Psoas
13	chr10:95655000-95674600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:95655000-95676600	Weak transcription	Fetal Stomach	stomach
15	chr10:95655200-95666800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:95655200-95667000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:95655200-95667600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:95655200-95668800	Weak transcription	Colonic Mucosa	Colon
19	chr10:95655200-95673400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:95655200-95673400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:95655200-95676200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:95655200-95676200	Weak transcription	Fetal Heart	heart
23	chr10:95655200-95676400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:95655200-95676600	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:95655400-95667000	Weak transcription	Fetal Brain Female	brain
26	chr10:95655400-95667600	Weak transcription	Osteobl	bone
27	chr10:95655400-95676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:95655400-95676800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:95655600-95667000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:95655600-95667800	Weak transcription	A549	lung
31	chr10:95655600-95674600	Weak transcription	Thymus	Thymus
32	chr10:95655600-95675400	Weak transcription	Fetal Lung	lung
33	chr10:95655800-95667600	Weak transcription	Adipose Nuclei	Adipose
34	chr10:95656400-95667000	Weak transcription	Hela-S3	cervix
35	chr10:95657000-95672000	Weak transcription	Lung	lung
36	chr10:95657200-95666600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:95657200-95676600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:95657400-95689200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:95657600-95666600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:95657600-95667800	Weak transcription	GM12878-XiMat	blood
41	chr10:95657600-95676600	Weak transcription	Right Atrium	heart
42	chr10:95658000-95667400	Weak transcription	K562	blood
43	chr10:95658200-95676800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:95658400-95671800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:95660800-95668400	Weak transcription	Aorta	Aorta
46	chr10:95661000-95666800	Weak transcription	HSMM	muscle
47	chr10:95661000-95671600	Weak transcription	Left Ventricle	heart
48	chr10:95661200-95666600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:95661200-95666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:95661200-95667000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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