Variant report

Variant	rs7098106
Chromosome Location	chr10:95668327-95668328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1046414	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748616	0.89[ASN][1000 genomes]
rs10786148	1.00[JPT][hapmap]
rs10882364	1.00[JPT][hapmap]
rs11187724	1.00[JPT][hapmap]
rs11187725	1.00[JPT][hapmap]
rs12098741	1.00[JPT][hapmap]
rs1425302	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1477536	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17412233	1.00[JPT][hapmap]
rs1924702	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2093927	0.89[ASN][1000 genomes]
rs2422329	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3088126	1.00[JPT][hapmap]
rs4917956	1.00[JPT][hapmap]
rs4919543	0.89[ASN][1000 genomes]
rs6583920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7086303	1.00[JPT][hapmap]
rs7088236	1.00[JPT][hapmap]
rs7093763	1.00[JPT][hapmap]
rs7094460	1.00[JPT][hapmap]
rs7094662	1.00[JPT][hapmap]
rs7094961	1.00[JPT][hapmap]
rs714187	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898970	1.00[JPT][hapmap]
rs7903507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906044	1.00[JPT][hapmap]
rs7910246	1.00[JPT][hapmap]
rs7913238	1.00[JPT][hapmap]
rs7913668	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917744	1.00[JPT][hapmap]
rs7921454	1.00[JPT][hapmap]
rs7922581	1.00[JPT][hapmap]
rs7922879	0.91[ASN][1000 genomes]
rs890162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7098106	C10orf12	cis	cerebellum	SCAN
rs7098106	PLCE1	cis	cerebellum	SCAN
rs7098106	RPL13AP5	cis	cerebellum	SCAN
rs7098106	LGI1	cis	cerebellum	SCAN

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95654800-95671400	Weak transcription	NH-A	brain
2	chr10:95654800-95673600	Weak transcription	NHDF-Ad	bronchial
3	chr10:95654800-95676200	Weak transcription	Fetal Kidney	kidney
4	chr10:95654800-95676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:95654800-95677000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:95655000-95671000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:95655000-95672800	Weak transcription	Psoas Muscle	Psoas
8	chr10:95655000-95674600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:95655000-95676600	Weak transcription	Fetal Stomach	stomach
10	chr10:95655200-95668800	Weak transcription	Colonic Mucosa	Colon
11	chr10:95655200-95673400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:95655200-95673400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:95655200-95676200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:95655200-95676200	Weak transcription	Fetal Heart	heart
15	chr10:95655200-95676400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:95655200-95676600	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:95655400-95676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:95655400-95676800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:95655600-95674600	Weak transcription	Thymus	Thymus
20	chr10:95655600-95675400	Weak transcription	Fetal Lung	lung
21	chr10:95657000-95672000	Weak transcription	Lung	lung
22	chr10:95657200-95676600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:95657400-95689200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:95657600-95676600	Weak transcription	Right Atrium	heart
25	chr10:95658200-95676800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:95658400-95671800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:95660800-95668400	Weak transcription	Aorta	Aorta
28	chr10:95661000-95671600	Weak transcription	Left Ventricle	heart
29	chr10:95661200-95671000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:95662800-95670400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:95665000-95672800	Weak transcription	Gastric	stomach
32	chr10:95665600-95670200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr10:95665800-95673400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:95665800-95676800	Weak transcription	Spleen	Spleen
35	chr10:95666000-95668800	Strong transcription	Ovary	ovary
36	chr10:95666000-95669000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:95666000-95669000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:95666200-95668800	Strong transcription	Fetal Intestine Small	intestine
39	chr10:95666200-95672000	Weak transcription	Pancreas	Pancrea
40	chr10:95666200-95676800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:95666400-95671400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr10:95666400-95676600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr10:95666600-95668600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:95666600-95668600	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr10:95666600-95669000	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr10:95666800-95668600	Strong transcription	HSMM	muscle
47	chr10:95667000-95668600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:95667000-95668600	Strong transcription	Hela-S3	cervix
49	chr10:95667000-95668800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:95667000-95668800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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