Variant report

Variant	rs7917744
Chromosome Location	chr10:95656960-95656961
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:95635910..95638109-chr10:95655615..95657317,2	MCF-7	breast:
2	chr10:95655267..95660464-chr10:95662376..95665623,6	K562	blood:
3	chr10:95655301..95659438-chr10:95663461..95667580,3	MCF-7	breast:
4	chr10:95656822..95659821-chr10:95662806..95665895,3	MCF-7	breast:
5	chr10:95647063..95650467-chr10:95654358..95657175,3	MCF-7	breast:
6	chr10:95650817..95655373-chr10:95655592..95660244,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176273	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10430654	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10430655	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1046414	1.00[JPT][hapmap]
rs10748617	0.96[ASN][1000 genomes]
rs10786140	0.91[ASN][1000 genomes]
rs10786141	0.96[ASN][1000 genomes]
rs10786143	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882345	0.96[ASN][1000 genomes]
rs10882346	0.96[ASN][1000 genomes]
rs10882347	0.96[ASN][1000 genomes]
rs10882348	0.96[ASN][1000 genomes]
rs10882349	0.90[ASN][1000 genomes]
rs10882352	0.87[ASN][1000 genomes]
rs10882353	0.87[ASN][1000 genomes]
rs10882354	0.96[ASN][1000 genomes]
rs10882360	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882361	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882363	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882364	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882365	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187684	0.94[ASN][1000 genomes]
rs11187692	0.96[ASN][1000 genomes]
rs11187693	0.83[ASN][1000 genomes]
rs11187695	0.96[ASN][1000 genomes]
rs11187697	0.96[ASN][1000 genomes]
rs11187698	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187700	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11187710	0.94[ASN][1000 genomes]
rs11187718	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187729	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124885	0.87[EUR][1000 genomes]
rs1147649	0.86[EUR][1000 genomes]
rs1147650	0.86[EUR][1000 genomes]
rs1147651	0.86[EUR][1000 genomes]
rs1147652	0.87[EUR][1000 genomes]
rs12098741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1223467	0.86[EUR][1000 genomes]
rs1223468	0.85[EUR][1000 genomes]
rs1223469	0.85[EUR][1000 genomes]
rs1223470	0.83[EUR][1000 genomes]
rs1223471	0.86[EUR][1000 genomes]
rs1223472	0.82[EUR][1000 genomes]
rs1223496	0.84[EUR][1000 genomes]
rs1223497	0.83[EUR][1000 genomes]
rs1364823	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17412233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17412253	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1986401	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2104369	0.89[ASN][1000 genomes]
rs2113956	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422330	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422331	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901715	0.84[ASN][1000 genomes]
rs3088126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35298830	0.96[ASN][1000 genomes]
rs35640487	0.93[ASN][1000 genomes]
rs4917955	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917956	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917958	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919555	0.96[ASN][1000 genomes]
rs4919557	0.96[ASN][1000 genomes]
rs4919558	0.96[ASN][1000 genomes]
rs4919560	0.96[ASN][1000 genomes]
rs4919568	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58055107	0.96[ASN][1000 genomes]
rs60994317	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583920	1.00[JPT][hapmap]
rs7076661	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088236	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090399	0.96[ASN][1000 genomes]
rs7092643	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7092830	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092839	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092860	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7094460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7094548	0.96[ASN][1000 genomes]
rs7094662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7094961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7097533	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7100676	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899974	0.84[ASN][1000 genomes]
rs7900260	0.96[ASN][1000 genomes]
rs7904095	0.96[ASN][1000 genomes]
rs7905161	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906262	0.91[ASN][1000 genomes]
rs7910246	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7913113	0.96[ASN][1000 genomes]
rs7913175	0.96[ASN][1000 genomes]
rs7913189	0.96[ASN][1000 genomes]
rs7913238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913342	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913668	1.00[JPT][hapmap]
rs7921176	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7921454	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7922581	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7924240	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829230	0.86[EUR][1000 genomes]
rs829231	0.86[EUR][1000 genomes]
rs829233	0.86[EUR][1000 genomes]
rs829234	0.84[EUR][1000 genomes]
rs829235	0.86[EUR][1000 genomes]
rs829236	0.86[EUR][1000 genomes]
rs829237	0.86[EUR][1000 genomes]
rs829238	0.83[EUR][1000 genomes]
rs829239	0.86[EUR][1000 genomes]
rs829240	0.86[EUR][1000 genomes]
rs829241	0.86[EUR][1000 genomes]
rs829242	0.86[EUR][1000 genomes]
rs829244	0.86[EUR][1000 genomes]
rs829245	0.82[EUR][1000 genomes]
rs919003	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs919004	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs950085	0.96[ASN][1000 genomes]
rs950086	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9787520	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7917744	BTAF1	cis	parietal	SCAN

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95654400-95660600	Weak transcription	Aorta	Aorta
2	chr10:95654600-95657200	Weak transcription	Small Intestine	intestine
3	chr10:95654800-95660600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:95654800-95664600	Weak transcription	Gastric	stomach
5	chr10:95654800-95667800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:95654800-95671400	Weak transcription	NH-A	brain
7	chr10:95654800-95673600	Weak transcription	NHDF-Ad	bronchial
8	chr10:95654800-95676200	Weak transcription	Fetal Kidney	kidney
9	chr10:95654800-95676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:95654800-95677000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:95655000-95657200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:95655000-95657400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:95655000-95659200	Weak transcription	Left Ventricle	heart
14	chr10:95655000-95660400	Weak transcription	HSMM	muscle
15	chr10:95655000-95660600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:95655000-95662600	Weak transcription	Esophagus	oesophagus
17	chr10:95655000-95664000	Weak transcription	HUVEC	blood vessel
18	chr10:95655000-95665200	Weak transcription	NHEK	skin
19	chr10:95655000-95666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:95655000-95666800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:95655000-95667000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:95655000-95668000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:95655000-95668200	Weak transcription	Brain Angular Gyrus	brain
24	chr10:95655000-95671000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:95655000-95672800	Weak transcription	Psoas Muscle	Psoas
26	chr10:95655000-95674600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr10:95655000-95676600	Weak transcription	Fetal Stomach	stomach
28	chr10:95655200-95657000	Enhancers	Primary T cells from cord blood	blood
29	chr10:95655200-95657000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr10:95655200-95657200	Weak transcription	Right Atrium	heart
31	chr10:95655200-95657400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:95655200-95657400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:95655200-95657400	Weak transcription	Fetal Brain Male	brain
34	chr10:95655200-95660600	Weak transcription	HSMMtube	muscle
35	chr10:95655200-95662400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:95655200-95665600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:95655200-95666800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:95655200-95667000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr10:95655200-95667600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:95655200-95668800	Weak transcription	Colonic Mucosa	Colon
41	chr10:95655200-95673400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:95655200-95673400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:95655200-95676200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr10:95655200-95676200	Weak transcription	Fetal Heart	heart
45	chr10:95655200-95676400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr10:95655200-95676600	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:95655400-95659400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:95655400-95660600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:95655400-95665200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:95655400-95666400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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