Variant report

Variant	rs829245
Chromosome Location	chr10:95707255-95707256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95703261..95705312-chr10:95706628..95708531,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10786148	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs10882362	1.00[CHB][hapmap]
rs10882363	0.82[EUR][1000 genomes]
rs10882364	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10882365	0.89[EUR][1000 genomes]
rs11187721	1.00[CHB][hapmap]
rs11187723	1.00[CHB][hapmap]
rs11187724	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs11187725	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs11187728	1.00[CHB][hapmap]
rs11187729	0.83[EUR][1000 genomes]
rs1124885	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1147649	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147650	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1147651	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1147652	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12098741	0.92[CEU][hapmap]
rs1223467	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1223468	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1223469	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1223470	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1223471	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1223472	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1223496	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1223497	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17412233	0.92[CEU][hapmap]
rs2113955	1.00[CHB][hapmap]
rs2113956	0.83[EUR][1000 genomes]
rs2422331	0.83[EUR][1000 genomes]
rs3088126	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs4917956	0.85[CEU][hapmap]
rs7086303	0.93[CEU][hapmap]
rs7088236	0.93[CEU][hapmap]
rs7093763	0.93[CEU][hapmap]
rs7094460	0.93[CEU][hapmap]
rs7094662	0.93[CEU][hapmap]
rs7094961	0.93[CEU][hapmap]
rs7898970	0.92[CEU][hapmap]
rs7906044	0.92[CEU][hapmap]
rs7910246	0.86[CEU][hapmap]
rs7913238	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs7913342	0.82[EUR][1000 genomes]
rs7917744	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7921454	0.86[CEU][hapmap]
rs7922581	0.86[CEU][hapmap]
rs829230	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829231	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829233	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829234	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs829235	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829236	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829237	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829238	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs829239	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829240	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829241	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829242	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs829243	0.87[EUR][1000 genomes]
rs829244	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95703200-95721800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:95703800-95711600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:95705200-95707400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:95705200-95708200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:95705200-95708400	Enhancers	Fetal Muscle Leg	muscle
6	chr10:95705400-95707400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:95705400-95707600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:95705600-95707400	Enhancers	Fetal Lung	lung
9	chr10:95705600-95707800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:95705800-95707600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:95706400-95707400	Enhancers	NHLF	lung
12	chr10:95706400-95707600	Enhancers	Osteobl	bone
13	chr10:95706400-95707800	Enhancers	Fetal Heart	heart
14	chr10:95706400-95707800	Enhancers	Ovary	ovary
15	chr10:95706400-95707800	Enhancers	HSMM	muscle
16	chr10:95706400-95707800	Enhancers	NH-A	brain
17	chr10:95706600-95707400	Enhancers	NHDF-Ad	bronchial
18	chr10:95706600-95707600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:95706600-95707600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:95706600-95707600	Enhancers	Left Ventricle	heart
21	chr10:95706600-95707600	Enhancers	Psoas Muscle	Psoas
22	chr10:95706600-95707800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:95706600-95707800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:95706600-95707800	Enhancers	Fetal Muscle Trunk	muscle
25	chr10:95706600-95707800	Enhancers	Right Atrium	heart
26	chr10:95706600-95707800	Enhancers	Right Ventricle	heart
27	chr10:95706800-95707400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:95706800-95707400	Enhancers	Fetal Stomach	stomach
29	chr10:95707000-95707400	Enhancers	Fetal Thymus	thymus
30	chr10:95707200-95707400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr10:95707200-95707400	Flanking Active TSS	HSMMtube	muscle

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