Variant report

Variant	rs829231
Chromosome Location	chr10:95702364-95702365
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95700056..95702571-chr10:95785354..95788012,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10786148	0.92[CEU][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs10882362	1.00[CHB][hapmap]
rs10882363	0.86[EUR][1000 genomes]
rs10882364	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs10882365	0.92[EUR][1000 genomes]
rs11187721	1.00[CHB][hapmap];0.80[MKK][hapmap]
rs11187723	1.00[CHB][hapmap];0.80[MKK][hapmap]
rs11187724	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs11187725	0.92[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs11187728	1.00[CHB][hapmap];0.82[MKK][hapmap]
rs11187729	0.87[EUR][1000 genomes]
rs1124885	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147649	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1147650	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147651	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1147652	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12098741	0.92[CEU][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs1223467	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223468	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223469	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1223470	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223471	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1223472	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1223496	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1223497	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17412233	0.92[CEU][hapmap];0.80[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs2113955	1.00[CHB][hapmap]
rs2113956	0.87[EUR][1000 genomes]
rs2422331	0.87[EUR][1000 genomes]
rs3088126	0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs4917956	0.85[CEU][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap]
rs7086303	0.92[CEU][hapmap]
rs7088236	0.92[CEU][hapmap]
rs7093763	0.92[CEU][hapmap]
rs7094460	0.92[CEU][hapmap]
rs7094662	0.92[CEU][hapmap]
rs7094961	0.92[CEU][hapmap]
rs7898970	0.92[CEU][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs7906044	0.92[CEU][hapmap]
rs7910246	0.85[CEU][hapmap]
rs7913238	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7913342	0.86[EUR][1000 genomes]
rs7917744	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs7921454	0.85[CEU][hapmap]
rs7922581	0.85[CEU][hapmap]
rs829230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829233	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829234	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs829235	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829236	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829237	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829238	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs829239	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829240	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829241	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829242	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829243	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs829244	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs829245	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs829231	CC2D2B	cis	parietal	SCAN
rs829231	BTAF1	cis	parietal	SCAN
rs829231	RPL13AP5	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95699800-95703600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:95700200-95702400	Enhancers	Fetal Muscle Leg	muscle
3	chr10:95700800-95702400	Enhancers	Psoas Muscle	Psoas
4	chr10:95701200-95702400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr10:95701200-95706600	Weak transcription	Left Ventricle	heart
6	chr10:95701600-95706600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95701800-95703200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:95701800-95703200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:95701800-95703400	Weak transcription	Right Atrium	heart
10	chr10:95701800-95703400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:95701800-95703600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:95701800-95706400	Weak transcription	Fetal Heart	heart
13	chr10:95702000-95702800	Enhancers	HSMMtube	muscle
14	chr10:95702000-95706400	Weak transcription	HSMM	muscle
15	chr10:95702200-95703800	Enhancers	Fetal Intestine Small	intestine

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