Variant report

Variant	rs1223496
Chromosome Location	chr10:95708063-95708064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95703261..95705312-chr10:95706628..95708531,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10786148	0.82[EUR][1000 genomes]
rs10882363	0.84[EUR][1000 genomes]
rs10882364	0.85[EUR][1000 genomes]
rs10882365	0.90[EUR][1000 genomes]
rs11187724	0.84[EUR][1000 genomes]
rs11187725	0.84[EUR][1000 genomes]
rs11187729	0.85[EUR][1000 genomes]
rs1124885	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1147649	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1147650	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147651	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1147652	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223467	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1223468	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223469	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223470	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1223471	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1223472	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1223497	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2113956	0.85[EUR][1000 genomes]
rs2422331	0.85[EUR][1000 genomes]
rs3088126	0.84[EUR][1000 genomes]
rs7913238	0.84[EUR][1000 genomes]
rs7913342	0.84[EUR][1000 genomes]
rs7917744	0.84[EUR][1000 genomes]
rs829230	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829231	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829233	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829234	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs829235	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829236	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829237	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829238	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs829239	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829240	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829241	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829242	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829243	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs829244	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs829245	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95703200-95721800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:95703800-95711600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:95705200-95708200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr10:95705200-95708400	Enhancers	Fetal Muscle Leg	muscle
5	chr10:95707400-95722800	Weak transcription	Fetal Stomach	stomach
6	chr10:95707800-95711400	Weak transcription	Fetal Heart	heart
7	chr10:95707800-95712400	Weak transcription	Right Atrium	heart
8	chr10:95707800-95713200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:95707800-95713800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:95707800-95725600	Weak transcription	Ovary	ovary
11	chr10:95708000-95714800	Weak transcription	HSMMtube	muscle

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