Variant report

Variant	rs11187729
Chromosome Location	chr10:95667270-95667271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95655301..95659438-chr10:95663461..95667580,3	MCF-7	breast:

Extended variants
information (count: 122 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10430654	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10430655	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1046414	1.00[JPT][hapmap]
rs10748617	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10786140	0.91[ASN][1000 genomes]
rs10786141	0.96[ASN][1000 genomes]
rs10786143	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10786148	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882345	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882346	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882347	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882348	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882349	0.90[ASN][1000 genomes]
rs10882352	0.87[ASN][1000 genomes]
rs10882353	0.87[ASN][1000 genomes]
rs10882354	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10882360	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882361	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882364	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882365	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11187684	0.94[ASN][1000 genomes]
rs11187692	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187693	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11187695	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187697	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187698	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187700	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11187710	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11187718	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124885	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1147649	0.87[EUR][1000 genomes]
rs1147650	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1147651	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1147652	0.88[EUR][1000 genomes]
rs12098741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1223467	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1223468	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1223469	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1223470	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1223471	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1223472	0.83[EUR][1000 genomes]
rs1223496	0.85[EUR][1000 genomes]
rs1223497	0.84[EUR][1000 genomes]
rs1364823	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17412233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17412253	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1986401	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2104369	0.89[ASN][1000 genomes]
rs2113956	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2422330	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422331	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901715	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3088126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35298830	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35640487	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4917955	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917956	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4917958	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919555	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919557	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919558	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919560	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4919568	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58055107	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60994317	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6583920	1.00[JPT][hapmap]
rs7076661	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7086303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088236	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090399	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7092643	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7092830	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092839	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7092860	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094548	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7094961	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7097533	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7100676	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899974	0.84[ASN][1000 genomes]
rs7900260	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7904095	0.96[ASN][1000 genomes]
rs7905161	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906262	0.91[ASN][1000 genomes]
rs7910246	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7913113	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7913175	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7913189	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7913238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913342	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913668	1.00[JPT][hapmap]
rs7917744	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921176	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7921454	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7922581	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7924240	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs829230	0.87[EUR][1000 genomes]
rs829231	0.87[EUR][1000 genomes]
rs829233	0.87[EUR][1000 genomes]
rs829234	0.85[EUR][1000 genomes]
rs829235	0.87[EUR][1000 genomes]
rs829236	0.87[EUR][1000 genomes]
rs829237	0.87[EUR][1000 genomes]
rs829238	0.84[EUR][1000 genomes]
rs829239	0.87[EUR][1000 genomes]
rs829240	0.87[EUR][1000 genomes]
rs829241	0.87[EUR][1000 genomes]
rs829242	0.87[EUR][1000 genomes]
rs829244	0.87[EUR][1000 genomes]
rs829245	0.83[EUR][1000 genomes]
rs919003	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs919004	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs950085	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs950086	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9787520	0.96[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11187729	BTAF1	cis	parietal	SCAN
rs11187729	SLC35G1	cis	lung	GTEx
rs11187729	SLC35G1	cis	Artery Tibial	GTEx

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95654800-95667800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:95654800-95671400	Weak transcription	NH-A	brain
3	chr10:95654800-95673600	Weak transcription	NHDF-Ad	bronchial
4	chr10:95654800-95676200	Weak transcription	Fetal Kidney	kidney
5	chr10:95654800-95676800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:95654800-95677000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:95655000-95668000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:95655000-95668200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:95655000-95671000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:95655000-95672800	Weak transcription	Psoas Muscle	Psoas
11	chr10:95655000-95674600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:95655000-95676600	Weak transcription	Fetal Stomach	stomach
13	chr10:95655200-95667600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:95655200-95668800	Weak transcription	Colonic Mucosa	Colon
15	chr10:95655200-95673400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:95655200-95673400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:95655200-95676200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:95655200-95676200	Weak transcription	Fetal Heart	heart
19	chr10:95655200-95676400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:95655200-95676600	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:95655400-95667600	Weak transcription	Osteobl	bone
22	chr10:95655400-95676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:95655400-95676800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:95655600-95667800	Weak transcription	A549	lung
25	chr10:95655600-95674600	Weak transcription	Thymus	Thymus
26	chr10:95655600-95675400	Weak transcription	Fetal Lung	lung
27	chr10:95655800-95667600	Weak transcription	Adipose Nuclei	Adipose
28	chr10:95657000-95672000	Weak transcription	Lung	lung
29	chr10:95657200-95676600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:95657400-95689200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:95657600-95667800	Weak transcription	GM12878-XiMat	blood
32	chr10:95657600-95676600	Weak transcription	Right Atrium	heart
33	chr10:95658000-95667400	Weak transcription	K562	blood
34	chr10:95658200-95676800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:95658400-95671800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:95660800-95668400	Weak transcription	Aorta	Aorta
37	chr10:95661000-95671600	Weak transcription	Left Ventricle	heart
38	chr10:95661200-95667600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr10:95661200-95667800	Weak transcription	Fetal Intestine Large	intestine
40	chr10:95661200-95671000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:95662800-95670400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:95663000-95667800	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:95664000-95667800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:95664800-95667800	Enhancers	Primary T helper cells PMA-I stimulated	--
45	chr10:95665000-95672800	Weak transcription	Gastric	stomach
46	chr10:95665200-95667800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr10:95665400-95667600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr10:95665400-95668000	Enhancers	Primary T cells from cord blood	blood
49	chr10:95665600-95670200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:95665800-95673400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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